Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS14060 and ABIE51_RS14065 are separated by 1 nucleotides ABIE51_RS14065 and ABIE51_RS14070 are separated by 22 nucleotides ABIE51_RS14070 and ABIE51_RS14075 overlap by 1 nucleotides ABIE51_RS14075 and ABIE51_RS14080 are separated by 259 nucleotides ABIE51_RS14080 and ABIE51_RS14085 are separated by 98 nucleotides
ABIE51_RS14060: ABIE51_RS14060 - MBL fold metallo-hydrolase, at 3,043,623 to 3,044,381
_RS14060
ABIE51_RS14065: ABIE51_RS14065 - 3-deoxy-D-manno-octulosonic acid kinase, at 3,044,383 to 3,045,132
_RS14065
ABIE51_RS14070: ABIE51_RS14070 - glycosyltransferase family 9 protein, at 3,045,155 to 3,046,258
_RS14070
ABIE51_RS14075: ABIE51_RS14075 - hypothetical protein, at 3,046,258 to 3,046,608
_RS14075
ABIE51_RS14080: ABIE51_RS14080 - tRNA-Ser, at 3,046,868 to 3,046,958
_RS14080
ABIE51_RS14085: ABIE51_RS14085 - DUF6165 family protein, at 3,047,057 to 3,047,464
_RS14085
Position (kb)
3045
3046
3047 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3044.201 kb on + strand, within ABIE51_RS14060 at 3044.201 kb on + strand, within ABIE51_RS14060 at 3044.202 kb on - strand, within ABIE51_RS14060 at 3044.239 kb on + strand, within ABIE51_RS14060 at 3044.240 kb on - strand, within ABIE51_RS14060 at 3044.248 kb on + strand, within ABIE51_RS14060 at 3044.387 kb on + strand at 3044.411 kb on + strand at 3045.144 kb on + strand at 3045.144 kb on + strand at 3045.515 kb on + strand, within ABIE51_RS14070 at 3046.058 kb on + strand, within ABIE51_RS14070 at 3046.059 kb on - strand, within ABIE51_RS14070 at 3046.074 kb on - strand, within ABIE51_RS14070 at 3046.074 kb on - strand, within ABIE51_RS14070 at 3046.088 kb on + strand, within ABIE51_RS14070 at 3046.088 kb on + strand, within ABIE51_RS14070 at 3046.089 kb on - strand, within ABIE51_RS14070 at 3046.109 kb on + strand, within ABIE51_RS14070 at 3046.109 kb on + strand, within ABIE51_RS14070 at 3046.214 kb on + strand at 3046.215 kb on - strand at 3046.591 kb on + strand at 3046.732 kb on + strand at 3046.982 kb on - strand at 3047.024 kb on + strand at 3047.024 kb on + strand at 3047.025 kb on - strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.031 kb on + strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand at 3047.032 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media remove 3,044,201 + ABIE51_RS14060 0.76 -0.5 3,044,201 + ABIE51_RS14060 0.76 +0.6 3,044,202 - ABIE51_RS14060 0.76 -0.5 3,044,239 + ABIE51_RS14060 0.81 -1.3 3,044,240 - ABIE51_RS14060 0.81 +1.5 3,044,248 + ABIE51_RS14060 0.82 +0.7 3,044,387 + +0.1 3,044,411 + -0.3 3,045,144 + +0.1 3,045,144 + +0.7 3,045,515 + ABIE51_RS14070 0.33 -1.9 3,046,058 + ABIE51_RS14070 0.82 -2.6 3,046,059 - ABIE51_RS14070 0.82 -1.9 3,046,074 - ABIE51_RS14070 0.83 -2.6 3,046,074 - ABIE51_RS14070 0.83 -2.2 3,046,088 + ABIE51_RS14070 0.85 -1.4 3,046,088 + ABIE51_RS14070 0.85 -3.2 3,046,089 - ABIE51_RS14070 0.85 -3.8 3,046,109 + ABIE51_RS14070 0.86 -2.7 3,046,109 + ABIE51_RS14070 0.86 -2.0 3,046,214 + -0.1 3,046,215 - -0.0 3,046,591 + -0.3 3,046,732 + +0.5 3,046,982 - -0.2 3,047,024 + -0.2 3,047,024 + -1.2 3,047,025 - +0.1 3,047,031 + -0.4 3,047,031 + +0.4 3,047,031 + -0.2 3,047,031 + -0.2 3,047,031 + +0.5 3,047,031 + +0.6 3,047,031 + +1.1 3,047,031 + +0.2 3,047,032 - +0.3 3,047,032 - +0.3 3,047,032 - +0.0 3,047,032 - -1.1 3,047,032 - +1.2 3,047,032 - -0.8 3,047,032 - -0.1 3,047,032 - +0.1 3,047,032 - -0.1 3,047,032 - +0.4
Or see this region's nucleotide sequence