Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS13935

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS13930 and ABIE51_RS13935 are separated by 249 nucleotidesABIE51_RS13935 and ABIE51_RS13940 are separated by 166 nucleotidesABIE51_RS13940 and ABIE51_RS13945 are separated by 130 nucleotides ABIE51_RS13930: ABIE51_RS13930 - aminodeoxychorismate synthase component I, at 3,020,905 to 3,022,272 _RS13930 ABIE51_RS13935: ABIE51_RS13935 - beta-ketoacyl-ACP synthase II, at 3,022,522 to 3,023,763 _RS13935 ABIE51_RS13940: ABIE51_RS13940 - acyl carrier protein, at 3,023,930 to 3,024,169 _RS13940 ABIE51_RS13945: ABIE51_RS13945 - 3-oxoacyl-ACP reductase FabG, at 3,024,300 to 3,025,043 _RS13945 Position (kb) 3022 3023 3024Strain fitness (log2 ratio) -2 -1 0 1at 3021.595 kb on + strand, within ABIE51_RS13930at 3021.596 kb on - strand, within ABIE51_RS13930at 3021.680 kb on + strand, within ABIE51_RS13930at 3021.680 kb on + strand, within ABIE51_RS13930at 3021.697 kb on + strand, within ABIE51_RS13930at 3021.965 kb on + strand, within ABIE51_RS13930at 3021.966 kb on - strand, within ABIE51_RS13930at 3022.289 kb on - strandat 3022.289 kb on - strandat 3022.289 kb on - strandat 3022.311 kb on + strandat 3022.311 kb on + strandat 3022.312 kb on - strandat 3022.312 kb on - strandat 3023.784 kb on - strandat 3023.784 kb on - strandat 3023.794 kb on - strandat 3023.796 kb on - strandat 3023.796 kb on - strandat 3023.796 kb on - strandat 3023.796 kb on - strandat 3023.796 kb on - strandat 3023.808 kb on - strandat 3023.823 kb on + strandat 3023.824 kb on - strandat 3023.824 kb on - strandat 3023.824 kb on - strandat 3023.824 kb on - strandat 3023.824 kb on - strandat 3023.824 kb on - strandat 3023.855 kb on - strandat 3023.855 kb on - strandat 3023.932 kb on - strandat 3023.932 kb on - strandat 3023.932 kb on - strandat 3023.932 kb on - strandat 3023.932 kb on - strandat 3024.213 kb on + strandat 3024.213 kb on + strandat 3024.213 kb on + strandat 3024.214 kb on - strandat 3024.214 kb on - strandat 3024.214 kb on - strandat 3024.214 kb on - strandat 3024.214 kb on - strandat 3024.241 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strandat 3024.311 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
remove
3,021,595 + ABIE51_RS13930 0.50 +0.9
3,021,596 - ABIE51_RS13930 0.51 +0.2
3,021,680 + ABIE51_RS13930 0.57 +0.4
3,021,680 + ABIE51_RS13930 0.57 +0.1
3,021,697 + ABIE51_RS13930 0.58 -0.1
3,021,965 + ABIE51_RS13930 0.77 -0.2
3,021,966 - ABIE51_RS13930 0.78 -0.2
3,022,289 - -0.3
3,022,289 - -0.1
3,022,289 - +0.2
3,022,311 + +0.0
3,022,311 + +1.6
3,022,312 - +0.2
3,022,312 - -0.4
3,023,784 - -0.6
3,023,784 - +0.1
3,023,794 - -0.0
3,023,796 - +0.2
3,023,796 - -0.1
3,023,796 - -1.2
3,023,796 - -0.4
3,023,796 - +0.2
3,023,808 - +0.2
3,023,823 + +1.1
3,023,824 - +0.7
3,023,824 - +0.1
3,023,824 - +0.5
3,023,824 - -0.1
3,023,824 - -0.1
3,023,824 - +0.3
3,023,855 - +0.3
3,023,855 - +0.1
3,023,932 - +0.4
3,023,932 - -0.5
3,023,932 - +0.1
3,023,932 - +0.0
3,023,932 - -0.1
3,024,213 + -1.9
3,024,213 + -2.6
3,024,213 + -2.2
3,024,214 - +0.3
3,024,214 - -1.0
3,024,214 - +0.5
3,024,214 - -0.1
3,024,214 - -0.2
3,024,241 - -0.0
3,024,311 - -0.3
3,024,311 - -1.3
3,024,311 - -1.0
3,024,311 - +0.7
3,024,311 - +0.0
3,024,311 - -0.1
3,024,311 - -0.5
3,024,311 - +0.7
3,024,311 - -0.5
3,024,311 - +1.5
3,024,311 - -0.3
3,024,311 - +0.4
3,024,311 - +1.5
3,024,311 - -0.1

Or see this region's nucleotide sequence