Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS13930 and ABIE51_RS13935 are separated by 249 nucleotides ABIE51_RS13935 and ABIE51_RS13940 are separated by 166 nucleotides ABIE51_RS13940 and ABIE51_RS13945 are separated by 130 nucleotides
ABIE51_RS13930: ABIE51_RS13930 - aminodeoxychorismate synthase component I, at 3,020,905 to 3,022,272
_RS13930
ABIE51_RS13935: ABIE51_RS13935 - beta-ketoacyl-ACP synthase II, at 3,022,522 to 3,023,763
_RS13935
ABIE51_RS13940: ABIE51_RS13940 - acyl carrier protein, at 3,023,930 to 3,024,169
_RS13940
ABIE51_RS13945: ABIE51_RS13945 - 3-oxoacyl-ACP reductase FabG, at 3,024,300 to 3,025,043
_RS13945
Position (kb)
3022
3023
3024 Strain fitness (log2 ratio)
-2
-1
0
1 at 3021.595 kb on + strand, within ABIE51_RS13930 at 3021.596 kb on - strand, within ABIE51_RS13930 at 3021.680 kb on + strand, within ABIE51_RS13930 at 3021.680 kb on + strand, within ABIE51_RS13930 at 3021.697 kb on + strand, within ABIE51_RS13930 at 3021.965 kb on + strand, within ABIE51_RS13930 at 3021.966 kb on - strand, within ABIE51_RS13930 at 3022.289 kb on - strand at 3022.289 kb on - strand at 3022.289 kb on - strand at 3022.311 kb on + strand at 3022.311 kb on + strand at 3022.312 kb on - strand at 3022.312 kb on - strand at 3023.784 kb on - strand at 3023.784 kb on - strand at 3023.794 kb on - strand at 3023.796 kb on - strand at 3023.796 kb on - strand at 3023.796 kb on - strand at 3023.796 kb on - strand at 3023.796 kb on - strand at 3023.808 kb on - strand at 3023.823 kb on + strand at 3023.824 kb on - strand at 3023.824 kb on - strand at 3023.824 kb on - strand at 3023.824 kb on - strand at 3023.824 kb on - strand at 3023.824 kb on - strand at 3023.855 kb on - strand at 3023.855 kb on - strand at 3023.932 kb on - strand at 3023.932 kb on - strand at 3023.932 kb on - strand at 3023.932 kb on - strand at 3023.932 kb on - strand at 3024.213 kb on + strand at 3024.213 kb on + strand at 3024.213 kb on + strand at 3024.214 kb on - strand at 3024.214 kb on - strand at 3024.214 kb on - strand at 3024.214 kb on - strand at 3024.214 kb on - strand at 3024.241 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand at 3024.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI; R2A media remove 3,021,595 + ABIE51_RS13930 0.50 +0.9 3,021,596 - ABIE51_RS13930 0.51 +0.2 3,021,680 + ABIE51_RS13930 0.57 +0.4 3,021,680 + ABIE51_RS13930 0.57 +0.1 3,021,697 + ABIE51_RS13930 0.58 -0.1 3,021,965 + ABIE51_RS13930 0.77 -0.2 3,021,966 - ABIE51_RS13930 0.78 -0.2 3,022,289 - -0.3 3,022,289 - -0.1 3,022,289 - +0.2 3,022,311 + +0.0 3,022,311 + +1.6 3,022,312 - +0.2 3,022,312 - -0.4 3,023,784 - -0.6 3,023,784 - +0.1 3,023,794 - -0.0 3,023,796 - +0.2 3,023,796 - -0.1 3,023,796 - -1.2 3,023,796 - -0.4 3,023,796 - +0.2 3,023,808 - +0.2 3,023,823 + +1.1 3,023,824 - +0.7 3,023,824 - +0.1 3,023,824 - +0.5 3,023,824 - -0.1 3,023,824 - -0.1 3,023,824 - +0.3 3,023,855 - +0.3 3,023,855 - +0.1 3,023,932 - +0.4 3,023,932 - -0.5 3,023,932 - +0.1 3,023,932 - +0.0 3,023,932 - -0.1 3,024,213 + -1.9 3,024,213 + -2.6 3,024,213 + -2.2 3,024,214 - +0.3 3,024,214 - -1.0 3,024,214 - +0.5 3,024,214 - -0.1 3,024,214 - -0.2 3,024,241 - -0.0 3,024,311 - -0.3 3,024,311 - -1.3 3,024,311 - -1.0 3,024,311 - +0.7 3,024,311 - +0.0 3,024,311 - -0.1 3,024,311 - -0.5 3,024,311 - +0.7 3,024,311 - -0.5 3,024,311 - +1.5 3,024,311 - -0.3 3,024,311 - +0.4 3,024,311 - +1.5 3,024,311 - -0.1
Or see this region's nucleotide sequence