Experiment: Parafilmed volatile R2A_HEPES agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04915 and ABIE51_RS04920 are separated by 40 nucleotides ABIE51_RS04920 and ABIE51_RS04925 are separated by 159 nucleotides
ABIE51_RS04915: ABIE51_RS04915 - glycoside hydrolase family 15 protein, at 1,064,614 to 1,066,407
_RS04915
ABIE51_RS04920: ABIE51_RS04920 - trehalose-phosphatase, at 1,066,448 to 1,067,197
_RS04920
ABIE51_RS04925: ABIE51_RS04925 - ATP-dependent chaperone ClpB, at 1,067,357 to 1,069,942
_RS04925
Position (kb)
1066
1067
1068 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1065.480 kb on - strand, within ABIE51_RS04915 at 1065.524 kb on + strand, within ABIE51_RS04915 at 1065.524 kb on + strand, within ABIE51_RS04915 at 1065.533 kb on + strand, within ABIE51_RS04915 at 1065.533 kb on + strand, within ABIE51_RS04915 at 1065.533 kb on + strand, within ABIE51_RS04915 at 1065.534 kb on - strand, within ABIE51_RS04915 at 1065.534 kb on - strand, within ABIE51_RS04915 at 1065.614 kb on + strand, within ABIE51_RS04915 at 1065.614 kb on + strand, within ABIE51_RS04915 at 1065.615 kb on - strand, within ABIE51_RS04915 at 1065.615 kb on - strand, within ABIE51_RS04915 at 1065.693 kb on - strand, within ABIE51_RS04915 at 1065.782 kb on + strand, within ABIE51_RS04915 at 1065.782 kb on + strand, within ABIE51_RS04915 at 1065.783 kb on - strand, within ABIE51_RS04915 at 1066.004 kb on + strand, within ABIE51_RS04915 at 1066.193 kb on + strand, within ABIE51_RS04915 at 1066.194 kb on - strand, within ABIE51_RS04915 at 1066.194 kb on - strand, within ABIE51_RS04915 at 1066.194 kb on - strand, within ABIE51_RS04915 at 1066.510 kb on - strand at 1066.758 kb on + strand, within ABIE51_RS04920 at 1066.758 kb on + strand, within ABIE51_RS04920 at 1067.244 kb on + strand at 1067.244 kb on + strand at 1067.245 kb on - strand at 1067.320 kb on + strand at 1067.321 kb on - strand at 1067.846 kb on + strand, within ABIE51_RS04925 at 1067.846 kb on + strand, within ABIE51_RS04925 at 1067.846 kb on + strand, within ABIE51_RS04925 at 1067.846 kb on + strand, within ABIE51_RS04925 at 1067.847 kb on - strand, within ABIE51_RS04925 at 1067.847 kb on - strand, within ABIE51_RS04925
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile R2A_HEPES agar plate with no fungus remove 1,065,480 - ABIE51_RS04915 0.48 -0.8 1,065,524 + ABIE51_RS04915 0.51 -0.9 1,065,524 + ABIE51_RS04915 0.51 +0.4 1,065,533 + ABIE51_RS04915 0.51 +0.3 1,065,533 + ABIE51_RS04915 0.51 -0.7 1,065,533 + ABIE51_RS04915 0.51 -0.8 1,065,534 - ABIE51_RS04915 0.51 +0.9 1,065,534 - ABIE51_RS04915 0.51 +0.3 1,065,614 + ABIE51_RS04915 0.56 -0.1 1,065,614 + ABIE51_RS04915 0.56 +0.0 1,065,615 - ABIE51_RS04915 0.56 -0.0 1,065,615 - ABIE51_RS04915 0.56 +0.9 1,065,693 - ABIE51_RS04915 0.60 -0.1 1,065,782 + ABIE51_RS04915 0.65 -0.4 1,065,782 + ABIE51_RS04915 0.65 +0.2 1,065,783 - ABIE51_RS04915 0.65 +0.2 1,066,004 + ABIE51_RS04915 0.77 -0.5 1,066,193 + ABIE51_RS04915 0.88 -0.6 1,066,194 - ABIE51_RS04915 0.88 -0.1 1,066,194 - ABIE51_RS04915 0.88 +0.3 1,066,194 - ABIE51_RS04915 0.88 -1.6 1,066,510 - -4.2 1,066,758 + ABIE51_RS04920 0.41 +1.1 1,066,758 + ABIE51_RS04920 0.41 -1.6 1,067,244 + -0.6 1,067,244 + -0.3 1,067,245 - -0.4 1,067,320 + -0.1 1,067,321 - -0.3 1,067,846 + ABIE51_RS04925 0.19 -0.4 1,067,846 + ABIE51_RS04925 0.19 -0.7 1,067,846 + ABIE51_RS04925 0.19 +0.2 1,067,846 + ABIE51_RS04925 0.19 +0.8 1,067,847 - ABIE51_RS04925 0.19 -0.4 1,067,847 - ABIE51_RS04925 0.19 +0.2
Or see this region's nucleotide sequence