Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS04920

Experiment: Parafilmed volatile R2A_HEPES agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS04915 and ABIE51_RS04920 are separated by 40 nucleotidesABIE51_RS04920 and ABIE51_RS04925 are separated by 159 nucleotides ABIE51_RS04915: ABIE51_RS04915 - glycoside hydrolase family 15 protein, at 1,064,614 to 1,066,407 _RS04915 ABIE51_RS04920: ABIE51_RS04920 - trehalose-phosphatase, at 1,066,448 to 1,067,197 _RS04920 ABIE51_RS04925: ABIE51_RS04925 - ATP-dependent chaperone ClpB, at 1,067,357 to 1,069,942 _RS04925 Position (kb) 1066 1067 1068Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1065.480 kb on - strand, within ABIE51_RS04915at 1065.524 kb on + strand, within ABIE51_RS04915at 1065.524 kb on + strand, within ABIE51_RS04915at 1065.533 kb on + strand, within ABIE51_RS04915at 1065.533 kb on + strand, within ABIE51_RS04915at 1065.533 kb on + strand, within ABIE51_RS04915at 1065.534 kb on - strand, within ABIE51_RS04915at 1065.534 kb on - strand, within ABIE51_RS04915at 1065.614 kb on + strand, within ABIE51_RS04915at 1065.614 kb on + strand, within ABIE51_RS04915at 1065.615 kb on - strand, within ABIE51_RS04915at 1065.615 kb on - strand, within ABIE51_RS04915at 1065.693 kb on - strand, within ABIE51_RS04915at 1065.782 kb on + strand, within ABIE51_RS04915at 1065.782 kb on + strand, within ABIE51_RS04915at 1065.783 kb on - strand, within ABIE51_RS04915at 1066.004 kb on + strand, within ABIE51_RS04915at 1066.193 kb on + strand, within ABIE51_RS04915at 1066.194 kb on - strand, within ABIE51_RS04915at 1066.194 kb on - strand, within ABIE51_RS04915at 1066.194 kb on - strand, within ABIE51_RS04915at 1066.510 kb on - strandat 1066.758 kb on + strand, within ABIE51_RS04920at 1066.758 kb on + strand, within ABIE51_RS04920at 1067.244 kb on + strandat 1067.244 kb on + strandat 1067.245 kb on - strandat 1067.320 kb on + strandat 1067.321 kb on - strandat 1067.846 kb on + strand, within ABIE51_RS04925at 1067.846 kb on + strand, within ABIE51_RS04925at 1067.846 kb on + strand, within ABIE51_RS04925at 1067.846 kb on + strand, within ABIE51_RS04925at 1067.847 kb on - strand, within ABIE51_RS04925at 1067.847 kb on - strand, within ABIE51_RS04925

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A_HEPES agar plate with no fungus
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1,065,480 - ABIE51_RS04915 0.48 -0.8
1,065,524 + ABIE51_RS04915 0.51 -0.9
1,065,524 + ABIE51_RS04915 0.51 +0.4
1,065,533 + ABIE51_RS04915 0.51 +0.3
1,065,533 + ABIE51_RS04915 0.51 -0.7
1,065,533 + ABIE51_RS04915 0.51 -0.8
1,065,534 - ABIE51_RS04915 0.51 +0.9
1,065,534 - ABIE51_RS04915 0.51 +0.3
1,065,614 + ABIE51_RS04915 0.56 -0.1
1,065,614 + ABIE51_RS04915 0.56 +0.0
1,065,615 - ABIE51_RS04915 0.56 -0.0
1,065,615 - ABIE51_RS04915 0.56 +0.9
1,065,693 - ABIE51_RS04915 0.60 -0.1
1,065,782 + ABIE51_RS04915 0.65 -0.4
1,065,782 + ABIE51_RS04915 0.65 +0.2
1,065,783 - ABIE51_RS04915 0.65 +0.2
1,066,004 + ABIE51_RS04915 0.77 -0.5
1,066,193 + ABIE51_RS04915 0.88 -0.6
1,066,194 - ABIE51_RS04915 0.88 -0.1
1,066,194 - ABIE51_RS04915 0.88 +0.3
1,066,194 - ABIE51_RS04915 0.88 -1.6
1,066,510 - -4.2
1,066,758 + ABIE51_RS04920 0.41 +1.1
1,066,758 + ABIE51_RS04920 0.41 -1.6
1,067,244 + -0.6
1,067,244 + -0.3
1,067,245 - -0.4
1,067,320 + -0.1
1,067,321 - -0.3
1,067,846 + ABIE51_RS04925 0.19 -0.4
1,067,846 + ABIE51_RS04925 0.19 -0.7
1,067,846 + ABIE51_RS04925 0.19 +0.2
1,067,846 + ABIE51_RS04925 0.19 +0.8
1,067,847 - ABIE51_RS04925 0.19 -0.4
1,067,847 - ABIE51_RS04925 0.19 +0.2

Or see this region's nucleotide sequence