Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08085

Experiment: Parafilmed volatile R2A_HEPES agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS08075 and ABIE51_RS08080 are separated by 236 nucleotidesABIE51_RS08080 and ABIE51_RS08085 are separated by 77 nucleotidesABIE51_RS08085 and ABIE51_RS08090 are separated by 198 nucleotidesABIE51_RS08090 and ABIE51_RS08095 are separated by 135 nucleotides ABIE51_RS08075: ABIE51_RS08075 - TraB/GumN family protein, at 1,718,669 to 1,719,718 _RS08075 ABIE51_RS08080: ABIE51_RS08080 - Rnf electron transport complex subunit RnfB, at 1,719,955 to 1,720,362 _RS08080 ABIE51_RS08085: ABIE51_RS08085 - methionine--tRNA ligase, at 1,720,440 to 1,722,512 _RS08085 ABIE51_RS08090: ABIE51_RS08090 - DUF2147 domain-containing protein, at 1,722,711 to 1,723,160 _RS08090 ABIE51_RS08095: ABIE51_RS08095 - TonB-dependent receptor, at 1,723,296 to 1,726,145 _RS08095 Position (kb) 1720 1721 1722 1723Strain fitness (log2 ratio) -1 0 1at 1719.471 kb on - strand, within ABIE51_RS08075at 1719.471 kb on - strand, within ABIE51_RS08075at 1719.471 kb on - strand, within ABIE51_RS08075at 1719.623 kb on + strandat 1719.623 kb on + strandat 1719.624 kb on - strandat 1719.624 kb on - strandat 1719.716 kb on + strandat 1719.716 kb on + strandat 1719.717 kb on - strandat 1719.717 kb on - strandat 1719.717 kb on - strandat 1719.717 kb on - strandat 1722.576 kb on - strandat 1722.576 kb on - strandat 1722.623 kb on + strandat 1722.623 kb on + strandat 1722.814 kb on + strand, within ABIE51_RS08090at 1722.814 kb on + strand, within ABIE51_RS08090at 1722.814 kb on + strand, within ABIE51_RS08090at 1722.815 kb on - strand, within ABIE51_RS08090at 1723.015 kb on + strand, within ABIE51_RS08090at 1723.015 kb on + strand, within ABIE51_RS08090at 1723.015 kb on + strand, within ABIE51_RS08090at 1723.016 kb on - strand, within ABIE51_RS08090at 1723.016 kb on - strand, within ABIE51_RS08090at 1723.016 kb on - strand, within ABIE51_RS08090at 1723.016 kb on - strand, within ABIE51_RS08090at 1723.154 kb on + strandat 1723.155 kb on - strandat 1723.155 kb on - strandat 1723.194 kb on + strandat 1723.194 kb on + strandat 1723.194 kb on + strandat 1723.195 kb on - strandat 1723.195 kb on - strandat 1723.195 kb on - strandat 1723.195 kb on - strandat 1723.328 kb on - strandat 1723.342 kb on + strandat 1723.343 kb on - strandat 1723.351 kb on + strandat 1723.351 kb on + strandat 1723.351 kb on + strandat 1723.352 kb on - strandat 1723.352 kb on - strandat 1723.366 kb on + strandat 1723.367 kb on - strandat 1723.391 kb on - strandat 1723.391 kb on - strandat 1723.471 kb on + strandat 1723.471 kb on + strandat 1723.471 kb on + strandat 1723.472 kb on - strandat 1723.472 kb on - strandat 1723.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A_HEPES agar plate with no fungus
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1,719,471 - ABIE51_RS08075 0.76 -1.7
1,719,471 - ABIE51_RS08075 0.76 +1.0
1,719,471 - ABIE51_RS08075 0.76 -0.1
1,719,623 + -0.3
1,719,623 + +0.3
1,719,624 - -0.8
1,719,624 - -0.7
1,719,716 + -0.2
1,719,716 + +0.2
1,719,717 - -0.1
1,719,717 - -0.1
1,719,717 - +0.1
1,719,717 - +0.2
1,722,576 - +0.1
1,722,576 - +0.1
1,722,623 + -0.3
1,722,623 + +0.4
1,722,814 + ABIE51_RS08090 0.23 -0.4
1,722,814 + ABIE51_RS08090 0.23 +0.1
1,722,814 + ABIE51_RS08090 0.23 +0.1
1,722,815 - ABIE51_RS08090 0.23 -0.4
1,723,015 + ABIE51_RS08090 0.68 -0.1
1,723,015 + ABIE51_RS08090 0.68 +1.1
1,723,015 + ABIE51_RS08090 0.68 -0.5
1,723,016 - ABIE51_RS08090 0.68 +0.5
1,723,016 - ABIE51_RS08090 0.68 -0.7
1,723,016 - ABIE51_RS08090 0.68 -0.7
1,723,016 - ABIE51_RS08090 0.68 -0.0
1,723,154 + +0.5
1,723,155 - -0.3
1,723,155 - +0.3
1,723,194 + -0.3
1,723,194 + -0.7
1,723,194 + +0.6
1,723,195 - -1.1
1,723,195 - -0.2
1,723,195 - +0.4
1,723,195 - +0.2
1,723,328 - +0.9
1,723,342 + -0.3
1,723,343 - -1.0
1,723,351 + +0.6
1,723,351 + -1.0
1,723,351 + -1.2
1,723,352 - -0.2
1,723,352 - +0.3
1,723,366 + -0.0
1,723,367 - +0.2
1,723,391 - +0.0
1,723,391 - +1.2
1,723,471 + +0.0
1,723,471 + -0.4
1,723,471 + -0.2
1,723,472 - +0.1
1,723,472 - -0.2
1,723,472 - -0.6

Or see this region's nucleotide sequence