Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS03250

Experiment: Parafilmed volatile R2A_HEPES agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS03245 and ABIE51_RS03250 overlap by 4 nucleotidesABIE51_RS03250 and ABIE51_RS03255 are separated by 133 nucleotidesABIE51_RS03255 and ABIE51_RS03260 are separated by 12 nucleotides ABIE51_RS03245: ABIE51_RS03245 - AI-2E family transporter, at 719,316 to 720,449 _RS03245 ABIE51_RS03250: ABIE51_RS03250 - hypothetical protein, at 720,446 to 720,940 _RS03250 ABIE51_RS03255: ABIE51_RS03255 - phage holin family protein, at 721,074 to 721,490 _RS03255 ABIE51_RS03260: ABIE51_RS03260 - hypothetical protein, at 721,503 to 721,841 _RS03260 Position (kb) 720 721Strain fitness (log2 ratio) -1 0 1 2at 719.533 kb on + strand, within ABIE51_RS03245at 719.533 kb on + strand, within ABIE51_RS03245at 719.626 kb on + strand, within ABIE51_RS03245at 719.626 kb on + strand, within ABIE51_RS03245at 719.626 kb on + strand, within ABIE51_RS03245at 719.627 kb on - strand, within ABIE51_RS03245at 719.698 kb on + strand, within ABIE51_RS03245at 719.698 kb on + strand, within ABIE51_RS03245at 719.698 kb on + strand, within ABIE51_RS03245at 719.699 kb on - strand, within ABIE51_RS03245at 719.758 kb on + strand, within ABIE51_RS03245at 719.758 kb on + strand, within ABIE51_RS03245at 719.759 kb on - strand, within ABIE51_RS03245at 719.759 kb on - strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.863 kb on + strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.864 kb on - strand, within ABIE51_RS03245at 719.941 kb on + strand, within ABIE51_RS03245at 719.941 kb on + strand, within ABIE51_RS03245at 719.941 kb on + strand, within ABIE51_RS03245at 719.941 kb on + strand, within ABIE51_RS03245at 719.941 kb on + strand, within ABIE51_RS03245at 719.942 kb on - strand, within ABIE51_RS03245at 719.942 kb on - strand, within ABIE51_RS03245at 719.942 kb on - strand, within ABIE51_RS03245at 719.942 kb on - strand, within ABIE51_RS03245at 719.942 kb on - strand, within ABIE51_RS03245at 720.052 kb on + strand, within ABIE51_RS03245at 720.052 kb on + strand, within ABIE51_RS03245at 720.053 kb on - strand, within ABIE51_RS03245at 720.205 kb on + strand, within ABIE51_RS03245at 720.205 kb on + strand, within ABIE51_RS03245at 720.205 kb on + strand, within ABIE51_RS03245at 720.205 kb on + strand, within ABIE51_RS03245at 720.205 kb on + strand, within ABIE51_RS03245at 720.205 kb on + strand, within ABIE51_RS03245at 720.205 kb on + strand, within ABIE51_RS03245at 720.205 kb on + strand, within ABIE51_RS03245at 720.205 kb on + strand, within ABIE51_RS03245at 720.205 kb on + strand, within ABIE51_RS03245at 720.206 kb on - strand, within ABIE51_RS03245at 720.206 kb on - strand, within ABIE51_RS03245at 720.206 kb on - strand, within ABIE51_RS03245at 720.206 kb on - strand, within ABIE51_RS03245at 720.206 kb on - strand, within ABIE51_RS03245at 720.206 kb on - strand, within ABIE51_RS03245at 720.206 kb on - strand, within ABIE51_RS03245at 720.206 kb on - strand, within ABIE51_RS03245at 720.516 kb on + strand, within ABIE51_RS03250at 720.516 kb on + strand, within ABIE51_RS03250at 720.516 kb on + strand, within ABIE51_RS03250at 720.516 kb on + strand, within ABIE51_RS03250at 720.516 kb on + strand, within ABIE51_RS03250at 721.129 kb on + strand, within ABIE51_RS03255at 721.129 kb on + strand, within ABIE51_RS03255at 721.129 kb on + strand, within ABIE51_RS03255at 721.129 kb on + strand, within ABIE51_RS03255at 721.129 kb on + strand, within ABIE51_RS03255at 721.129 kb on + strand, within ABIE51_RS03255at 721.129 kb on + strand, within ABIE51_RS03255at 721.130 kb on - strand, within ABIE51_RS03255at 721.130 kb on - strand, within ABIE51_RS03255at 721.130 kb on - strand, within ABIE51_RS03255at 721.130 kb on - strand, within ABIE51_RS03255at 721.130 kb on - strand, within ABIE51_RS03255at 721.130 kb on - strand, within ABIE51_RS03255at 721.153 kb on + strand, within ABIE51_RS03255at 721.504 kb on + strandat 721.504 kb on + strandat 721.504 kb on + strandat 721.504 kb on + strandat 721.504 kb on + strandat 721.504 kb on + strandat 721.504 kb on + strandat 721.504 kb on + strandat 721.504 kb on + strandat 721.504 kb on + strandat 721.504 kb on + strandat 721.505 kb on - strandat 721.505 kb on - strandat 721.505 kb on - strandat 721.505 kb on - strandat 721.505 kb on - strandat 721.505 kb on - strandat 721.505 kb on - strandat 721.505 kb on - strandat 721.505 kb on - strandat 721.852 kb on + strandat 721.852 kb on + strandat 721.852 kb on + strandat 721.852 kb on + strandat 721.852 kb on + strandat 721.853 kb on - strandat 721.853 kb on - strandat 721.853 kb on - strandat 721.853 kb on - strandat 721.853 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A_HEPES agar plate with no fungus
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719,533 + ABIE51_RS03245 0.19 +0.4
719,533 + ABIE51_RS03245 0.19 +0.2
719,626 + ABIE51_RS03245 0.27 -0.3
719,626 + ABIE51_RS03245 0.27 -0.6
719,626 + ABIE51_RS03245 0.27 +0.6
719,627 - ABIE51_RS03245 0.27 -0.2
719,698 + ABIE51_RS03245 0.34 +0.5
719,698 + ABIE51_RS03245 0.34 -0.1
719,698 + ABIE51_RS03245 0.34 -0.6
719,699 - ABIE51_RS03245 0.34 -0.3
719,758 + ABIE51_RS03245 0.39 -0.7
719,758 + ABIE51_RS03245 0.39 -0.2
719,759 - ABIE51_RS03245 0.39 +0.9
719,759 - ABIE51_RS03245 0.39 -0.3
719,863 + ABIE51_RS03245 0.48 -0.0
719,863 + ABIE51_RS03245 0.48 +0.0
719,863 + ABIE51_RS03245 0.48 +0.2
719,863 + ABIE51_RS03245 0.48 +0.1
719,863 + ABIE51_RS03245 0.48 +0.0
719,863 + ABIE51_RS03245 0.48 -0.1
719,863 + ABIE51_RS03245 0.48 -0.0
719,863 + ABIE51_RS03245 0.48 +0.6
719,864 - ABIE51_RS03245 0.48 +0.0
719,864 - ABIE51_RS03245 0.48 +0.3
719,864 - ABIE51_RS03245 0.48 +0.3
719,864 - ABIE51_RS03245 0.48 +0.3
719,864 - ABIE51_RS03245 0.48 +0.2
719,864 - ABIE51_RS03245 0.48 +0.3
719,864 - ABIE51_RS03245 0.48 -0.7
719,864 - ABIE51_RS03245 0.48 -0.2
719,941 + ABIE51_RS03245 0.55 +0.1
719,941 + ABIE51_RS03245 0.55 -0.1
719,941 + ABIE51_RS03245 0.55 -0.3
719,941 + ABIE51_RS03245 0.55 +0.3
719,941 + ABIE51_RS03245 0.55 -1.1
719,942 - ABIE51_RS03245 0.55 +0.2
719,942 - ABIE51_RS03245 0.55 +0.2
719,942 - ABIE51_RS03245 0.55 -1.1
719,942 - ABIE51_RS03245 0.55 -0.6
719,942 - ABIE51_RS03245 0.55 +0.4
720,052 + ABIE51_RS03245 0.65 -0.3
720,052 + ABIE51_RS03245 0.65 +0.1
720,053 - ABIE51_RS03245 0.65 +0.4
720,205 + ABIE51_RS03245 0.78 +0.3
720,205 + ABIE51_RS03245 0.78 +0.3
720,205 + ABIE51_RS03245 0.78 -0.3
720,205 + ABIE51_RS03245 0.78 +0.3
720,205 + ABIE51_RS03245 0.78 +0.7
720,205 + ABIE51_RS03245 0.78 -0.3
720,205 + ABIE51_RS03245 0.78 -1.6
720,205 + ABIE51_RS03245 0.78 +0.7
720,205 + ABIE51_RS03245 0.78 +0.0
720,205 + ABIE51_RS03245 0.78 -0.3
720,206 - ABIE51_RS03245 0.78 +0.1
720,206 - ABIE51_RS03245 0.78 -0.3
720,206 - ABIE51_RS03245 0.78 +0.2
720,206 - ABIE51_RS03245 0.78 -0.9
720,206 - ABIE51_RS03245 0.78 +0.3
720,206 - ABIE51_RS03245 0.78 +2.3
720,206 - ABIE51_RS03245 0.78 -0.9
720,206 - ABIE51_RS03245 0.78 +0.3
720,516 + ABIE51_RS03250 0.14 +0.3
720,516 + ABIE51_RS03250 0.14 -0.4
720,516 + ABIE51_RS03250 0.14 -0.8
720,516 + ABIE51_RS03250 0.14 -0.8
720,516 + ABIE51_RS03250 0.14 -0.6
721,129 + ABIE51_RS03255 0.13 -0.3
721,129 + ABIE51_RS03255 0.13 +2.0
721,129 + ABIE51_RS03255 0.13 -0.0
721,129 + ABIE51_RS03255 0.13 +0.2
721,129 + ABIE51_RS03255 0.13 +0.1
721,129 + ABIE51_RS03255 0.13 +1.3
721,129 + ABIE51_RS03255 0.13 +0.0
721,130 - ABIE51_RS03255 0.13 -0.5
721,130 - ABIE51_RS03255 0.13 +0.1
721,130 - ABIE51_RS03255 0.13 +0.4
721,130 - ABIE51_RS03255 0.13 +0.2
721,130 - ABIE51_RS03255 0.13 +0.2
721,130 - ABIE51_RS03255 0.13 -0.1
721,153 + ABIE51_RS03255 0.19 +0.0
721,504 + -0.6
721,504 + +0.2
721,504 + -0.0
721,504 + -0.1
721,504 + +0.1
721,504 + +0.2
721,504 + +0.3
721,504 + +2.3
721,504 + -0.2
721,504 + -0.0
721,504 + -0.1
721,505 - -0.1
721,505 - +0.2
721,505 - -0.3
721,505 - -0.6
721,505 - -1.4
721,505 - -0.3
721,505 - +0.2
721,505 - -0.3
721,505 - -0.4
721,852 + +0.0
721,852 + -0.1
721,852 + +0.0
721,852 + -1.7
721,852 + +0.4
721,853 - +0.2
721,853 - -0.5
721,853 - +0.1
721,853 - -0.3
721,853 - +0.1

Or see this region's nucleotide sequence