Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS00105

Experiment: Parafilmed volatile R2A_HEPES agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS00100 and ABIE51_RS00105 are separated by 0 nucleotidesABIE51_RS00105 and ABIE51_RS00110 are separated by 393 nucleotidesABIE51_RS00110 and ABIE51_RS00115 are separated by 9 nucleotides ABIE51_RS00100: ABIE51_RS00100 - arginine--tRNA ligase, at 19,696 to 21,384 _RS00100 ABIE51_RS00105: ABIE51_RS00105 - SPOR domain-containing protein, at 21,385 to 22,245 _RS00105 ABIE51_RS00110: ABIE51_RS00110 - hypothetical protein, at 22,639 to 23,034 _RS00110 ABIE51_RS00115: ABIE51_RS00115 - NAD(P)-dependent oxidoreductase, at 23,044 to 23,919 _RS00115 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 21.382 kb on + strandat 21.966 kb on + strand, within ABIE51_RS00105at 21.969 kb on + strand, within ABIE51_RS00105at 21.969 kb on + strand, within ABIE51_RS00105at 21.969 kb on + strand, within ABIE51_RS00105at 21.969 kb on + strand, within ABIE51_RS00105at 22.002 kb on + strand, within ABIE51_RS00105at 22.021 kb on + strand, within ABIE51_RS00105at 22.243 kb on + strandat 22.243 kb on + strandat 22.243 kb on + strandat 22.243 kb on + strandat 22.243 kb on + strandat 22.243 kb on + strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.244 kb on - strandat 22.319 kb on + strandat 22.319 kb on + strandat 22.319 kb on + strandat 22.319 kb on + strandat 22.320 kb on - strandat 22.320 kb on - strandat 22.371 kb on + strandat 22.600 kb on - strandat 22.708 kb on + strand, within ABIE51_RS00110at 22.708 kb on + strand, within ABIE51_RS00110at 22.708 kb on + strand, within ABIE51_RS00110at 22.708 kb on + strand, within ABIE51_RS00110at 22.708 kb on + strand, within ABIE51_RS00110at 22.708 kb on + strand, within ABIE51_RS00110at 22.709 kb on - strand, within ABIE51_RS00110at 22.709 kb on - strand, within ABIE51_RS00110at 22.709 kb on - strand, within ABIE51_RS00110at 22.709 kb on - strand, within ABIE51_RS00110at 22.709 kb on - strand, within ABIE51_RS00110at 22.784 kb on + strand, within ABIE51_RS00110at 22.784 kb on + strand, within ABIE51_RS00110at 22.784 kb on + strand, within ABIE51_RS00110at 22.785 kb on - strand, within ABIE51_RS00110at 22.785 kb on - strand, within ABIE51_RS00110at 22.785 kb on - strand, within ABIE51_RS00110at 22.785 kb on - strand, within ABIE51_RS00110at 22.785 kb on - strand, within ABIE51_RS00110at 22.785 kb on - strand, within ABIE51_RS00110at 23.080 kb on - strandat 23.080 kb on - strandat 23.117 kb on + strandat 23.117 kb on + strandat 23.117 kb on + strandat 23.118 kb on - strandat 23.118 kb on - strandat 23.118 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A_HEPES agar plate with no fungus
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21,382 + +0.1
21,966 + ABIE51_RS00105 0.67 +0.4
21,969 + ABIE51_RS00105 0.68 +1.6
21,969 + ABIE51_RS00105 0.68 +1.1
21,969 + ABIE51_RS00105 0.68 +0.2
21,969 + ABIE51_RS00105 0.68 +0.7
22,002 + ABIE51_RS00105 0.72 +0.5
22,021 + ABIE51_RS00105 0.74 +3.8
22,243 + +0.3
22,243 + +0.2
22,243 + +1.2
22,243 + +0.4
22,243 + -1.2
22,243 + -0.3
22,244 - -1.5
22,244 - +0.1
22,244 - -0.1
22,244 - -1.4
22,244 - -0.3
22,244 - +0.1
22,244 - +0.4
22,244 - +0.3
22,319 + +1.5
22,319 + -0.2
22,319 + +0.3
22,319 + +0.4
22,320 - +0.2
22,320 - +0.4
22,371 + -0.4
22,600 - +0.2
22,708 + ABIE51_RS00110 0.17 -1.8
22,708 + ABIE51_RS00110 0.17 +1.1
22,708 + ABIE51_RS00110 0.17 -0.5
22,708 + ABIE51_RS00110 0.17 +0.2
22,708 + ABIE51_RS00110 0.17 -0.3
22,708 + ABIE51_RS00110 0.17 -0.3
22,709 - ABIE51_RS00110 0.18 -0.3
22,709 - ABIE51_RS00110 0.18 -0.9
22,709 - ABIE51_RS00110 0.18 -0.0
22,709 - ABIE51_RS00110 0.18 +0.6
22,709 - ABIE51_RS00110 0.18 -0.2
22,784 + ABIE51_RS00110 0.37 +0.1
22,784 + ABIE51_RS00110 0.37 +0.1
22,784 + ABIE51_RS00110 0.37 +0.8
22,785 - ABIE51_RS00110 0.37 +0.2
22,785 - ABIE51_RS00110 0.37 +0.1
22,785 - ABIE51_RS00110 0.37 +0.2
22,785 - ABIE51_RS00110 0.37 -0.8
22,785 - ABIE51_RS00110 0.37 -0.8
22,785 - ABIE51_RS00110 0.37 -0.1
23,080 - +0.4
23,080 - +0.4
23,117 + +0.6
23,117 + -0.4
23,117 + -0.9
23,118 - -0.1
23,118 - +1.5
23,118 - +0.5

Or see this region's nucleotide sequence