Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS16800

Experiment: Parafilmed volatile R2A_HEPES agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS16795 and ABIE51_RS16800 overlap by 4 nucleotidesABIE51_RS16800 and ABIE51_RS16805 overlap by 1 nucleotides ABIE51_RS16795: ABIE51_RS16795 - flagellar protein export ATPase FliI, at 3,651,739 to 3,653,136 _RS16795 ABIE51_RS16800: ABIE51_RS16800 - flagellar export protein FliJ, at 3,653,133 to 3,653,576 _RS16800 ABIE51_RS16805: ABIE51_RS16805 - flagellar hook-length control protein FliK, at 3,653,576 to 3,654,877 _RS16805 Position (kb) 3653 3654Strain fitness (log2 ratio) -1 0 1 2 3at 3652.291 kb on - strand, within ABIE51_RS16795at 3652.705 kb on + strand, within ABIE51_RS16795at 3652.705 kb on + strand, within ABIE51_RS16795at 3652.706 kb on - strand, within ABIE51_RS16795at 3652.706 kb on - strand, within ABIE51_RS16795at 3652.817 kb on - strand, within ABIE51_RS16795at 3652.921 kb on + strand, within ABIE51_RS16795at 3652.921 kb on + strand, within ABIE51_RS16795at 3652.921 kb on + strand, within ABIE51_RS16795at 3652.922 kb on - strand, within ABIE51_RS16795at 3652.922 kb on - strand, within ABIE51_RS16795at 3652.922 kb on - strand, within ABIE51_RS16795at 3652.922 kb on - strand, within ABIE51_RS16795at 3652.957 kb on + strand, within ABIE51_RS16795at 3652.958 kb on - strand, within ABIE51_RS16795at 3652.958 kb on - strand, within ABIE51_RS16795at 3653.277 kb on + strand, within ABIE51_RS16800at 3653.278 kb on - strand, within ABIE51_RS16800at 3653.278 kb on - strand, within ABIE51_RS16800at 3653.475 kb on + strand, within ABIE51_RS16800at 3653.475 kb on + strand, within ABIE51_RS16800at 3653.673 kb on + strandat 3653.673 kb on + strandat 3653.673 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A_HEPES agar plate with no fungus
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3,652,291 - ABIE51_RS16795 0.39 +3.1
3,652,705 + ABIE51_RS16795 0.69 -0.3
3,652,705 + ABIE51_RS16795 0.69 +0.9
3,652,706 - ABIE51_RS16795 0.69 -0.3
3,652,706 - ABIE51_RS16795 0.69 -0.0
3,652,817 - ABIE51_RS16795 0.77 -0.5
3,652,921 + ABIE51_RS16795 0.85 -0.3
3,652,921 + ABIE51_RS16795 0.85 -0.0
3,652,921 + ABIE51_RS16795 0.85 -0.2
3,652,922 - ABIE51_RS16795 0.85 -1.3
3,652,922 - ABIE51_RS16795 0.85 +0.1
3,652,922 - ABIE51_RS16795 0.85 +0.2
3,652,922 - ABIE51_RS16795 0.85 +0.3
3,652,957 + ABIE51_RS16795 0.87 +0.0
3,652,958 - ABIE51_RS16795 0.87 -0.1
3,652,958 - ABIE51_RS16795 0.87 +0.5
3,653,277 + ABIE51_RS16800 0.32 +0.3
3,653,278 - ABIE51_RS16800 0.33 +0.3
3,653,278 - ABIE51_RS16800 0.33 -0.2
3,653,475 + ABIE51_RS16800 0.77 +0.7
3,653,475 + ABIE51_RS16800 0.77 +0.2
3,653,673 + -0.4
3,653,673 + -0.4
3,653,673 + +1.3

Or see this region's nucleotide sequence