Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS00595

Experiment: Aerobic; Cobalt chloride 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS00590 and ABCV34_RS00595 are separated by 15 nucleotidesABCV34_RS00595 and ABCV34_RS00600 are separated by 62 nucleotidesABCV34_RS00600 and ABCV34_RS00605 are separated by 11 nucleotides ABCV34_RS00590: ABCV34_RS00590 - branched-chain amino acid ABC transporter permease, at 125,707 to 126,588 _RS00590 ABCV34_RS00595: ABCV34_RS00595 - ABC transporter substrate-binding protein, at 126,604 to 127,761 _RS00595 ABCV34_RS00600: ABCV34_RS00600 - alpha/beta hydrolase, at 127,824 to 128,660 _RS00600 ABCV34_RS00605: ABCV34_RS00605 - benzoate-CoA ligase family protein, at 128,672 to 130,234 _RS00605 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1at 125.622 kb on - strandat 125.622 kb on - strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.624 kb on + strandat 125.625 kb on - strandat 125.625 kb on - strandat 125.625 kb on - strandat 125.625 kb on - strandat 125.635 kb on + strandat 125.765 kb on + strandat 125.766 kb on - strandat 125.766 kb on - strandat 125.812 kb on - strand, within ABCV34_RS00590at 125.812 kb on - strand, within ABCV34_RS00590at 125.924 kb on + strand, within ABCV34_RS00590at 125.925 kb on - strand, within ABCV34_RS00590at 126.098 kb on + strand, within ABCV34_RS00590at 126.098 kb on + strand, within ABCV34_RS00590at 126.098 kb on + strand, within ABCV34_RS00590at 126.099 kb on - strand, within ABCV34_RS00590at 126.099 kb on - strand, within ABCV34_RS00590at 126.099 kb on - strand, within ABCV34_RS00590at 126.155 kb on + strand, within ABCV34_RS00590at 126.156 kb on - strand, within ABCV34_RS00590at 126.156 kb on - strand, within ABCV34_RS00590at 126.156 kb on - strand, within ABCV34_RS00590at 126.272 kb on + strand, within ABCV34_RS00590at 126.272 kb on + strand, within ABCV34_RS00590at 126.272 kb on + strand, within ABCV34_RS00590at 126.273 kb on - strand, within ABCV34_RS00590at 126.273 kb on - strand, within ABCV34_RS00590at 126.273 kb on - strand, within ABCV34_RS00590at 126.273 kb on - strand, within ABCV34_RS00590at 126.308 kb on + strand, within ABCV34_RS00590at 126.309 kb on - strand, within ABCV34_RS00590at 126.341 kb on + strand, within ABCV34_RS00590at 126.341 kb on + strand, within ABCV34_RS00590at 126.341 kb on + strand, within ABCV34_RS00590at 126.342 kb on - strand, within ABCV34_RS00590at 126.342 kb on - strand, within ABCV34_RS00590at 126.440 kb on + strand, within ABCV34_RS00590at 126.440 kb on + strand, within ABCV34_RS00590at 126.440 kb on + strand, within ABCV34_RS00590at 126.440 kb on + strand, within ABCV34_RS00590at 126.441 kb on - strand, within ABCV34_RS00590at 126.441 kb on - strand, within ABCV34_RS00590at 126.441 kb on - strand, within ABCV34_RS00590at 126.455 kb on + strand, within ABCV34_RS00590at 126.455 kb on + strand, within ABCV34_RS00590at 126.455 kb on + strand, within ABCV34_RS00590at 126.455 kb on + strand, within ABCV34_RS00590at 126.455 kb on + strand, within ABCV34_RS00590at 126.455 kb on + strand, within ABCV34_RS00590at 126.455 kb on + strand, within ABCV34_RS00590at 126.455 kb on + strand, within ABCV34_RS00590at 126.456 kb on - strand, within ABCV34_RS00590at 126.456 kb on - strand, within ABCV34_RS00590at 126.456 kb on - strand, within ABCV34_RS00590at 126.456 kb on - strand, within ABCV34_RS00590at 126.456 kb on - strand, within ABCV34_RS00590at 126.456 kb on - strand, within ABCV34_RS00590at 126.456 kb on - strand, within ABCV34_RS00590at 126.543 kb on - strandat 126.574 kb on + strandat 126.574 kb on + strandat 126.574 kb on + strandat 126.574 kb on + strandat 126.574 kb on + strandat 126.574 kb on + strandat 126.574 kb on + strandat 126.575 kb on - strandat 126.575 kb on - strandat 126.575 kb on - strandat 126.605 kb on + strandat 126.606 kb on - strandat 126.606 kb on - strandat 126.692 kb on + strandat 126.692 kb on + strandat 126.692 kb on + strandat 126.693 kb on - strandat 126.693 kb on - strandat 126.693 kb on - strandat 126.693 kb on - strandat 126.693 kb on - strandat 126.693 kb on - strandat 126.693 kb on - strandat 126.696 kb on + strandat 126.697 kb on - strandat 126.697 kb on - strandat 126.697 kb on - strandat 126.697 kb on - strandat 126.697 kb on - strandat 126.848 kb on + strand, within ABCV34_RS00595at 126.848 kb on + strand, within ABCV34_RS00595at 126.849 kb on - strand, within ABCV34_RS00595at 126.849 kb on - strand, within ABCV34_RS00595at 126.899 kb on + strand, within ABCV34_RS00595at 126.899 kb on + strand, within ABCV34_RS00595at 126.899 kb on + strand, within ABCV34_RS00595at 126.899 kb on + strand, within ABCV34_RS00595at 126.899 kb on + strand, within ABCV34_RS00595at 126.899 kb on + strand, within ABCV34_RS00595at 126.900 kb on - strand, within ABCV34_RS00595at 126.900 kb on - strand, within ABCV34_RS00595at 126.900 kb on - strand, within ABCV34_RS00595at 126.900 kb on - strand, within ABCV34_RS00595at 126.948 kb on - strand, within ABCV34_RS00595at 126.948 kb on - strand, within ABCV34_RS00595at 127.256 kb on + strand, within ABCV34_RS00595at 127.257 kb on - strand, within ABCV34_RS00595at 127.257 kb on - strand, within ABCV34_RS00595at 127.257 kb on - strand, within ABCV34_RS00595at 127.257 kb on - strand, within ABCV34_RS00595at 127.284 kb on + strand, within ABCV34_RS00595at 127.284 kb on + strand, within ABCV34_RS00595at 127.284 kb on + strand, within ABCV34_RS00595at 127.284 kb on + strand, within ABCV34_RS00595at 127.284 kb on + strand, within ABCV34_RS00595at 127.285 kb on - strand, within ABCV34_RS00595at 127.285 kb on - strand, within ABCV34_RS00595at 127.285 kb on - strand, within ABCV34_RS00595at 127.286 kb on + strand, within ABCV34_RS00595at 127.286 kb on + strand, within ABCV34_RS00595at 127.286 kb on + strand, within ABCV34_RS00595at 127.287 kb on - strand, within ABCV34_RS00595at 127.287 kb on - strand, within ABCV34_RS00595at 127.287 kb on - strand, within ABCV34_RS00595at 127.287 kb on - strand, within ABCV34_RS00595at 127.287 kb on - strand, within ABCV34_RS00595at 127.287 kb on - strand, within ABCV34_RS00595at 127.370 kb on - strand, within ABCV34_RS00595at 127.370 kb on - strand, within ABCV34_RS00595at 127.565 kb on + strand, within ABCV34_RS00595at 127.565 kb on + strand, within ABCV34_RS00595at 127.565 kb on + strand, within ABCV34_RS00595at 127.565 kb on + strand, within ABCV34_RS00595at 127.565 kb on + strand, within ABCV34_RS00595at 127.565 kb on + strand, within ABCV34_RS00595at 127.566 kb on - strand, within ABCV34_RS00595at 127.566 kb on - strand, within ABCV34_RS00595at 127.566 kb on - strand, within ABCV34_RS00595at 127.566 kb on - strand, within ABCV34_RS00595at 127.610 kb on + strand, within ABCV34_RS00595at 127.610 kb on + strand, within ABCV34_RS00595at 127.610 kb on + strand, within ABCV34_RS00595at 127.610 kb on + strand, within ABCV34_RS00595at 127.610 kb on + strand, within ABCV34_RS00595at 127.611 kb on - strand, within ABCV34_RS00595at 127.611 kb on - strand, within ABCV34_RS00595at 127.611 kb on - strand, within ABCV34_RS00595at 127.611 kb on - strand, within ABCV34_RS00595at 127.611 kb on - strand, within ABCV34_RS00595at 127.652 kb on + strandat 127.652 kb on + strandat 127.653 kb on - strandat 127.664 kb on + strandat 127.664 kb on + strandat 127.665 kb on - strandat 127.825 kb on + strandat 127.825 kb on + strandat 127.826 kb on - strandat 127.999 kb on + strand, within ABCV34_RS00600at 127.999 kb on + strand, within ABCV34_RS00600at 128.000 kb on - strand, within ABCV34_RS00600at 128.152 kb on + strand, within ABCV34_RS00600at 128.152 kb on + strand, within ABCV34_RS00600at 128.152 kb on + strand, within ABCV34_RS00600at 128.152 kb on + strand, within ABCV34_RS00600at 128.152 kb on + strand, within ABCV34_RS00600at 128.153 kb on - strand, within ABCV34_RS00600at 128.153 kb on - strand, within ABCV34_RS00600at 128.153 kb on - strand, within ABCV34_RS00600at 128.153 kb on - strand, within ABCV34_RS00600at 128.153 kb on - strand, within ABCV34_RS00600at 128.173 kb on + strand, within ABCV34_RS00600at 128.173 kb on + strand, within ABCV34_RS00600at 128.173 kb on + strand, within ABCV34_RS00600at 128.173 kb on + strand, within ABCV34_RS00600at 128.173 kb on + strand, within ABCV34_RS00600at 128.173 kb on + strand, within ABCV34_RS00600at 128.173 kb on + strand, within ABCV34_RS00600at 128.173 kb on + strand, within ABCV34_RS00600at 128.174 kb on - strand, within ABCV34_RS00600at 128.174 kb on - strand, within ABCV34_RS00600at 128.174 kb on - strand, within ABCV34_RS00600at 128.174 kb on - strand, within ABCV34_RS00600at 128.266 kb on + strand, within ABCV34_RS00600at 128.266 kb on + strand, within ABCV34_RS00600at 128.266 kb on + strand, within ABCV34_RS00600at 128.267 kb on - strand, within ABCV34_RS00600at 128.267 kb on - strand, within ABCV34_RS00600at 128.267 kb on - strand, within ABCV34_RS00600at 128.267 kb on - strand, within ABCV34_RS00600at 128.267 kb on - strand, within ABCV34_RS00600at 128.278 kb on + strand, within ABCV34_RS00600at 128.674 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aerobic; Cobalt chloride 2
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125,622 - -1.9
125,622 - -1.5
125,624 + -0.1
125,624 + -1.7
125,624 + -3.5
125,624 + -1.7
125,624 + -1.1
125,624 + -3.3
125,624 + -1.9
125,624 + -1.8
125,624 + -1.0
125,625 - -1.1
125,625 - -2.3
125,625 - -1.2
125,625 - -1.2
125,635 + -3.2
125,765 + -1.5
125,766 - -1.2
125,766 - -0.2
125,812 - ABCV34_RS00590 0.12 -1.2
125,812 - ABCV34_RS00590 0.12 -2.1
125,924 + ABCV34_RS00590 0.25 -0.6
125,925 - ABCV34_RS00590 0.25 -1.2
126,098 + ABCV34_RS00590 0.44 -1.7
126,098 + ABCV34_RS00590 0.44 -2.2
126,098 + ABCV34_RS00590 0.44 -1.7
126,099 - ABCV34_RS00590 0.44 -1.7
126,099 - ABCV34_RS00590 0.44 +0.7
126,099 - ABCV34_RS00590 0.44 -1.4
126,155 + ABCV34_RS00590 0.51 -1.5
126,156 - ABCV34_RS00590 0.51 -1.5
126,156 - ABCV34_RS00590 0.51 -1.5
126,156 - ABCV34_RS00590 0.51 -0.0
126,272 + ABCV34_RS00590 0.64 -2.2
126,272 + ABCV34_RS00590 0.64 -2.2
126,272 + ABCV34_RS00590 0.64 -2.4
126,273 - ABCV34_RS00590 0.64 -1.2
126,273 - ABCV34_RS00590 0.64 -1.6
126,273 - ABCV34_RS00590 0.64 -1.9
126,273 - ABCV34_RS00590 0.64 -1.9
126,308 + ABCV34_RS00590 0.68 +0.2
126,309 - ABCV34_RS00590 0.68 -1.5
126,341 + ABCV34_RS00590 0.72 -1.4
126,341 + ABCV34_RS00590 0.72 -0.5
126,341 + ABCV34_RS00590 0.72 -2.3
126,342 - ABCV34_RS00590 0.72 -2.1
126,342 - ABCV34_RS00590 0.72 -2.0
126,440 + ABCV34_RS00590 0.83 -2.1
126,440 + ABCV34_RS00590 0.83 -0.8
126,440 + ABCV34_RS00590 0.83 -0.9
126,440 + ABCV34_RS00590 0.83 -0.7
126,441 - ABCV34_RS00590 0.83 -2.6
126,441 - ABCV34_RS00590 0.83 -0.0
126,441 - ABCV34_RS00590 0.83 -1.7
126,455 + ABCV34_RS00590 0.85 -1.4
126,455 + ABCV34_RS00590 0.85 -1.7
126,455 + ABCV34_RS00590 0.85 -2.7
126,455 + ABCV34_RS00590 0.85 -0.9
126,455 + ABCV34_RS00590 0.85 -1.9
126,455 + ABCV34_RS00590 0.85 -1.3
126,455 + ABCV34_RS00590 0.85 -2.5
126,455 + ABCV34_RS00590 0.85 -0.8
126,456 - ABCV34_RS00590 0.85 -1.5
126,456 - ABCV34_RS00590 0.85 -2.2
126,456 - ABCV34_RS00590 0.85 -1.9
126,456 - ABCV34_RS00590 0.85 -1.3
126,456 - ABCV34_RS00590 0.85 -0.6
126,456 - ABCV34_RS00590 0.85 -3.6
126,456 - ABCV34_RS00590 0.85 -2.3
126,543 - -1.4
126,574 + -1.7
126,574 + -3.3
126,574 + -1.7
126,574 + -1.1
126,574 + -1.5
126,574 + -1.8
126,574 + -1.7
126,575 - -2.2
126,575 - -0.4
126,575 - +0.1
126,605 + -1.8
126,606 - -0.7
126,606 - -1.3
126,692 + -1.2
126,692 + -1.5
126,692 + -1.5
126,693 - -1.4
126,693 - -2.2
126,693 - -1.8
126,693 - -1.3
126,693 - -1.6
126,693 - -2.0
126,693 - +0.2
126,696 + -1.3
126,697 - -1.9
126,697 - -1.3
126,697 - -1.8
126,697 - -0.9
126,697 - -1.6
126,848 + ABCV34_RS00595 0.21 -0.8
126,848 + ABCV34_RS00595 0.21 +0.3
126,849 - ABCV34_RS00595 0.21 -1.7
126,849 - ABCV34_RS00595 0.21 -0.7
126,899 + ABCV34_RS00595 0.25 -1.1
126,899 + ABCV34_RS00595 0.25 -1.5
126,899 + ABCV34_RS00595 0.25 -0.3
126,899 + ABCV34_RS00595 0.25 -0.8
126,899 + ABCV34_RS00595 0.25 -1.3
126,899 + ABCV34_RS00595 0.25 -0.6
126,900 - ABCV34_RS00595 0.26 -1.0
126,900 - ABCV34_RS00595 0.26 -2.2
126,900 - ABCV34_RS00595 0.26 -1.5
126,900 - ABCV34_RS00595 0.26 -1.2
126,948 - ABCV34_RS00595 0.30 -2.0
126,948 - ABCV34_RS00595 0.30 -3.2
127,256 + ABCV34_RS00595 0.56 -1.0
127,257 - ABCV34_RS00595 0.56 -0.7
127,257 - ABCV34_RS00595 0.56 -0.8
127,257 - ABCV34_RS00595 0.56 -0.9
127,257 - ABCV34_RS00595 0.56 -0.1
127,284 + ABCV34_RS00595 0.59 -1.7
127,284 + ABCV34_RS00595 0.59 -1.7
127,284 + ABCV34_RS00595 0.59 -2.4
127,284 + ABCV34_RS00595 0.59 -0.5
127,284 + ABCV34_RS00595 0.59 -1.5
127,285 - ABCV34_RS00595 0.59 -1.9
127,285 - ABCV34_RS00595 0.59 -1.4
127,285 - ABCV34_RS00595 0.59 -1.8
127,286 + ABCV34_RS00595 0.59 -1.9
127,286 + ABCV34_RS00595 0.59 -1.4
127,286 + ABCV34_RS00595 0.59 -2.0
127,287 - ABCV34_RS00595 0.59 +0.7
127,287 - ABCV34_RS00595 0.59 -1.2
127,287 - ABCV34_RS00595 0.59 -2.5
127,287 - ABCV34_RS00595 0.59 -0.7
127,287 - ABCV34_RS00595 0.59 -1.5
127,287 - ABCV34_RS00595 0.59 -0.2
127,370 - ABCV34_RS00595 0.66 -1.1
127,370 - ABCV34_RS00595 0.66 -1.8
127,565 + ABCV34_RS00595 0.83 -1.2
127,565 + ABCV34_RS00595 0.83 -1.4
127,565 + ABCV34_RS00595 0.83 -1.8
127,565 + ABCV34_RS00595 0.83 -1.6
127,565 + ABCV34_RS00595 0.83 -1.6
127,565 + ABCV34_RS00595 0.83 -1.8
127,566 - ABCV34_RS00595 0.83 -2.0
127,566 - ABCV34_RS00595 0.83 -1.0
127,566 - ABCV34_RS00595 0.83 -2.0
127,566 - ABCV34_RS00595 0.83 -1.4
127,610 + ABCV34_RS00595 0.87 -2.8
127,610 + ABCV34_RS00595 0.87 -1.2
127,610 + ABCV34_RS00595 0.87 -1.4
127,610 + ABCV34_RS00595 0.87 -1.3
127,610 + ABCV34_RS00595 0.87 -1.1
127,611 - ABCV34_RS00595 0.87 -1.7
127,611 - ABCV34_RS00595 0.87 -1.7
127,611 - ABCV34_RS00595 0.87 -1.2
127,611 - ABCV34_RS00595 0.87 -2.0
127,611 - ABCV34_RS00595 0.87 -1.7
127,652 + -1.3
127,652 + -1.5
127,653 - -0.5
127,664 + -0.8
127,664 + -0.9
127,665 - -2.0
127,825 + -1.2
127,825 + -0.9
127,826 - -1.9
127,999 + ABCV34_RS00600 0.21 -1.5
127,999 + ABCV34_RS00600 0.21 -0.8
128,000 - ABCV34_RS00600 0.21 -1.9
128,152 + ABCV34_RS00600 0.39 -1.7
128,152 + ABCV34_RS00600 0.39 -1.3
128,152 + ABCV34_RS00600 0.39 -1.7
128,152 + ABCV34_RS00600 0.39 -2.0
128,152 + ABCV34_RS00600 0.39 -1.4
128,153 - ABCV34_RS00600 0.39 -1.6
128,153 - ABCV34_RS00600 0.39 -0.5
128,153 - ABCV34_RS00600 0.39 -0.6
128,153 - ABCV34_RS00600 0.39 -2.1
128,153 - ABCV34_RS00600 0.39 -2.6
128,173 + ABCV34_RS00600 0.42 -1.5
128,173 + ABCV34_RS00600 0.42 -1.3
128,173 + ABCV34_RS00600 0.42 -1.6
128,173 + ABCV34_RS00600 0.42 -1.4
128,173 + ABCV34_RS00600 0.42 -1.5
128,173 + ABCV34_RS00600 0.42 +0.4
128,173 + ABCV34_RS00600 0.42 -1.9
128,173 + ABCV34_RS00600 0.42 -1.1
128,174 - ABCV34_RS00600 0.42 -1.8
128,174 - ABCV34_RS00600 0.42 -1.6
128,174 - ABCV34_RS00600 0.42 -1.4
128,174 - ABCV34_RS00600 0.42 -1.0
128,266 + ABCV34_RS00600 0.53 -1.0
128,266 + ABCV34_RS00600 0.53 -1.8
128,266 + ABCV34_RS00600 0.53 -1.0
128,267 - ABCV34_RS00600 0.53 -2.3
128,267 - ABCV34_RS00600 0.53 -1.8
128,267 - ABCV34_RS00600 0.53 -2.6
128,267 - ABCV34_RS00600 0.53 -1.4
128,267 - ABCV34_RS00600 0.53 -2.1
128,278 + ABCV34_RS00600 0.54 -0.2
128,674 - -2.1

Or see this region's nucleotide sequence