Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS16050

Experiment: Parafilmed volatile R2A_HEPES agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS16045 and ABIE51_RS16050 are separated by 81 nucleotidesABIE51_RS16050 and ABIE51_RS16055 are separated by 129 nucleotides ABIE51_RS16045: ABIE51_RS16045 - ATP-binding protein, at 3,475,648 to 3,477,921 _RS16045 ABIE51_RS16050: ABIE51_RS16050 - PilT/PilU family type 4a pilus ATPase, at 3,478,003 to 3,479,175 _RS16050 ABIE51_RS16055: ABIE51_RS16055 - type IV pilus twitching motility protein PilT, at 3,479,305 to 3,480,342 _RS16055 Position (kb) 3478 3479 3480Strain fitness (log2 ratio) -1 0 1 2at 3477.208 kb on + strand, within ABIE51_RS16045at 3477.208 kb on + strand, within ABIE51_RS16045at 3477.208 kb on + strand, within ABIE51_RS16045at 3477.209 kb on - strand, within ABIE51_RS16045at 3477.985 kb on + strandat 3477.985 kb on + strandat 3477.986 kb on - strandat 3477.986 kb on - strandat 3478.151 kb on + strand, within ABIE51_RS16050at 3478.247 kb on + strand, within ABIE51_RS16050at 3478.247 kb on + strand, within ABIE51_RS16050at 3478.248 kb on - strand, within ABIE51_RS16050at 3478.248 kb on - strand, within ABIE51_RS16050at 3478.248 kb on - strand, within ABIE51_RS16050at 3478.248 kb on - strand, within ABIE51_RS16050at 3478.720 kb on - strand, within ABIE51_RS16050at 3478.865 kb on + strand, within ABIE51_RS16050at 3478.865 kb on + strand, within ABIE51_RS16050at 3478.866 kb on - strand, within ABIE51_RS16050at 3479.307 kb on - strandat 3479.411 kb on + strand, within ABIE51_RS16055at 3479.411 kb on + strand, within ABIE51_RS16055at 3479.412 kb on - strand, within ABIE51_RS16055at 3479.412 kb on - strand, within ABIE51_RS16055at 3479.438 kb on + strand, within ABIE51_RS16055at 3479.439 kb on - strand, within ABIE51_RS16055at 3479.439 kb on - strand, within ABIE51_RS16055at 3479.439 kb on - strand, within ABIE51_RS16055at 3479.747 kb on + strand, within ABIE51_RS16055at 3479.747 kb on + strand, within ABIE51_RS16055at 3479.747 kb on + strand, within ABIE51_RS16055at 3479.748 kb on - strand, within ABIE51_RS16055at 3479.748 kb on - strand, within ABIE51_RS16055at 3479.748 kb on - strand, within ABIE51_RS16055at 3479.748 kb on - strand, within ABIE51_RS16055at 3479.748 kb on - strand, within ABIE51_RS16055at 3479.888 kb on + strand, within ABIE51_RS16055at 3479.889 kb on - strand, within ABIE51_RS16055at 3479.889 kb on - strand, within ABIE51_RS16055at 3480.156 kb on - strand, within ABIE51_RS16055at 3480.156 kb on - strand, within ABIE51_RS16055at 3480.156 kb on - strand, within ABIE51_RS16055

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A_HEPES agar plate with no fungus
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3,477,208 + ABIE51_RS16045 0.69 -0.1
3,477,208 + ABIE51_RS16045 0.69 -0.3
3,477,208 + ABIE51_RS16045 0.69 -0.4
3,477,209 - ABIE51_RS16045 0.69 -0.6
3,477,985 + +0.1
3,477,985 + -0.3
3,477,986 - -1.0
3,477,986 - -0.1
3,478,151 + ABIE51_RS16050 0.13 +1.8
3,478,247 + ABIE51_RS16050 0.21 -0.9
3,478,247 + ABIE51_RS16050 0.21 +0.1
3,478,248 - ABIE51_RS16050 0.21 +0.1
3,478,248 - ABIE51_RS16050 0.21 -0.1
3,478,248 - ABIE51_RS16050 0.21 +2.7
3,478,248 - ABIE51_RS16050 0.21 +2.7
3,478,720 - ABIE51_RS16050 0.61 -0.5
3,478,865 + ABIE51_RS16050 0.73 +0.2
3,478,865 + ABIE51_RS16050 0.73 +0.6
3,478,866 - ABIE51_RS16050 0.74 +2.1
3,479,307 - -1.1
3,479,411 + ABIE51_RS16055 0.10 -0.4
3,479,411 + ABIE51_RS16055 0.10 -0.9
3,479,412 - ABIE51_RS16055 0.10 -1.4
3,479,412 - ABIE51_RS16055 0.10 -0.6
3,479,438 + ABIE51_RS16055 0.13 -0.2
3,479,439 - ABIE51_RS16055 0.13 -0.7
3,479,439 - ABIE51_RS16055 0.13 -0.2
3,479,439 - ABIE51_RS16055 0.13 -0.5
3,479,747 + ABIE51_RS16055 0.43 -1.2
3,479,747 + ABIE51_RS16055 0.43 -0.6
3,479,747 + ABIE51_RS16055 0.43 +0.3
3,479,748 - ABIE51_RS16055 0.43 +0.5
3,479,748 - ABIE51_RS16055 0.43 +0.5
3,479,748 - ABIE51_RS16055 0.43 -0.2
3,479,748 - ABIE51_RS16055 0.43 -0.3
3,479,748 - ABIE51_RS16055 0.43 +0.2
3,479,888 + ABIE51_RS16055 0.56 +0.2
3,479,889 - ABIE51_RS16055 0.56 +0.1
3,479,889 - ABIE51_RS16055 0.56 +0.1
3,480,156 - ABIE51_RS16055 0.82 +0.1
3,480,156 - ABIE51_RS16055 0.82 +0.1
3,480,156 - ABIE51_RS16055 0.82 +0.1

Or see this region's nucleotide sequence