Experiment: Parafilmed volatile R2A_HEPES agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS16045 and ABIE51_RS16050 are separated by 81 nucleotides ABIE51_RS16050 and ABIE51_RS16055 are separated by 129 nucleotides
ABIE51_RS16045: ABIE51_RS16045 - ATP-binding protein, at 3,475,648 to 3,477,921
_RS16045
ABIE51_RS16050: ABIE51_RS16050 - PilT/PilU family type 4a pilus ATPase, at 3,478,003 to 3,479,175
_RS16050
ABIE51_RS16055: ABIE51_RS16055 - type IV pilus twitching motility protein PilT, at 3,479,305 to 3,480,342
_RS16055
Position (kb)
3478
3479
3480 Strain fitness (log2 ratio)
-1
0
1
2 at 3477.208 kb on + strand, within ABIE51_RS16045 at 3477.208 kb on + strand, within ABIE51_RS16045 at 3477.208 kb on + strand, within ABIE51_RS16045 at 3477.209 kb on - strand, within ABIE51_RS16045 at 3477.985 kb on + strand at 3477.985 kb on + strand at 3477.986 kb on - strand at 3477.986 kb on - strand at 3478.151 kb on + strand, within ABIE51_RS16050 at 3478.247 kb on + strand, within ABIE51_RS16050 at 3478.247 kb on + strand, within ABIE51_RS16050 at 3478.248 kb on - strand, within ABIE51_RS16050 at 3478.248 kb on - strand, within ABIE51_RS16050 at 3478.248 kb on - strand, within ABIE51_RS16050 at 3478.248 kb on - strand, within ABIE51_RS16050 at 3478.720 kb on - strand, within ABIE51_RS16050 at 3478.865 kb on + strand, within ABIE51_RS16050 at 3478.865 kb on + strand, within ABIE51_RS16050 at 3478.866 kb on - strand, within ABIE51_RS16050 at 3479.307 kb on - strand at 3479.411 kb on + strand, within ABIE51_RS16055 at 3479.411 kb on + strand, within ABIE51_RS16055 at 3479.412 kb on - strand, within ABIE51_RS16055 at 3479.412 kb on - strand, within ABIE51_RS16055 at 3479.438 kb on + strand, within ABIE51_RS16055 at 3479.439 kb on - strand, within ABIE51_RS16055 at 3479.439 kb on - strand, within ABIE51_RS16055 at 3479.439 kb on - strand, within ABIE51_RS16055 at 3479.747 kb on + strand, within ABIE51_RS16055 at 3479.747 kb on + strand, within ABIE51_RS16055 at 3479.747 kb on + strand, within ABIE51_RS16055 at 3479.748 kb on - strand, within ABIE51_RS16055 at 3479.748 kb on - strand, within ABIE51_RS16055 at 3479.748 kb on - strand, within ABIE51_RS16055 at 3479.748 kb on - strand, within ABIE51_RS16055 at 3479.748 kb on - strand, within ABIE51_RS16055 at 3479.888 kb on + strand, within ABIE51_RS16055 at 3479.889 kb on - strand, within ABIE51_RS16055 at 3479.889 kb on - strand, within ABIE51_RS16055 at 3480.156 kb on - strand, within ABIE51_RS16055 at 3480.156 kb on - strand, within ABIE51_RS16055 at 3480.156 kb on - strand, within ABIE51_RS16055
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile R2A_HEPES agar plate with no fungus remove 3,477,208 + ABIE51_RS16045 0.69 -0.1 3,477,208 + ABIE51_RS16045 0.69 -0.3 3,477,208 + ABIE51_RS16045 0.69 -0.4 3,477,209 - ABIE51_RS16045 0.69 -0.6 3,477,985 + +0.1 3,477,985 + -0.3 3,477,986 - -1.0 3,477,986 - -0.1 3,478,151 + ABIE51_RS16050 0.13 +1.8 3,478,247 + ABIE51_RS16050 0.21 -0.9 3,478,247 + ABIE51_RS16050 0.21 +0.1 3,478,248 - ABIE51_RS16050 0.21 +0.1 3,478,248 - ABIE51_RS16050 0.21 -0.1 3,478,248 - ABIE51_RS16050 0.21 +2.7 3,478,248 - ABIE51_RS16050 0.21 +2.7 3,478,720 - ABIE51_RS16050 0.61 -0.5 3,478,865 + ABIE51_RS16050 0.73 +0.2 3,478,865 + ABIE51_RS16050 0.73 +0.6 3,478,866 - ABIE51_RS16050 0.74 +2.1 3,479,307 - -1.1 3,479,411 + ABIE51_RS16055 0.10 -0.4 3,479,411 + ABIE51_RS16055 0.10 -0.9 3,479,412 - ABIE51_RS16055 0.10 -1.4 3,479,412 - ABIE51_RS16055 0.10 -0.6 3,479,438 + ABIE51_RS16055 0.13 -0.2 3,479,439 - ABIE51_RS16055 0.13 -0.7 3,479,439 - ABIE51_RS16055 0.13 -0.2 3,479,439 - ABIE51_RS16055 0.13 -0.5 3,479,747 + ABIE51_RS16055 0.43 -1.2 3,479,747 + ABIE51_RS16055 0.43 -0.6 3,479,747 + ABIE51_RS16055 0.43 +0.3 3,479,748 - ABIE51_RS16055 0.43 +0.5 3,479,748 - ABIE51_RS16055 0.43 +0.5 3,479,748 - ABIE51_RS16055 0.43 -0.2 3,479,748 - ABIE51_RS16055 0.43 -0.3 3,479,748 - ABIE51_RS16055 0.43 +0.2 3,479,888 + ABIE51_RS16055 0.56 +0.2 3,479,889 - ABIE51_RS16055 0.56 +0.1 3,479,889 - ABIE51_RS16055 0.56 +0.1 3,480,156 - ABIE51_RS16055 0.82 +0.1 3,480,156 - ABIE51_RS16055 0.82 +0.1 3,480,156 - ABIE51_RS16055 0.82 +0.1
Or see this region's nucleotide sequence