Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS14670

Experiment: Parafilmed volatile R2A_HEPES agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS14665 and ABIE51_RS14670 are separated by 80 nucleotides ABIE51_RS14665: ABIE51_RS14665 - glycosyltransferase family 4 protein, at 3,183,318 to 3,184,376 _RS14665 ABIE51_RS14670: ABIE51_RS14670 - amylo-alpha-1,6-glucosidase, at 3,184,457 to 3,186,574 _RS14670 Position (kb) 3184 3185 3186 3187Strain fitness (log2 ratio) -2 -1 0 1at 3183.699 kb on + strand, within ABIE51_RS14665at 3183.699 kb on + strand, within ABIE51_RS14665at 3183.700 kb on - strand, within ABIE51_RS14665at 3183.700 kb on - strand, within ABIE51_RS14665at 3183.700 kb on - strand, within ABIE51_RS14665at 3183.840 kb on + strand, within ABIE51_RS14665at 3183.960 kb on + strand, within ABIE51_RS14665at 3183.961 kb on - strand, within ABIE51_RS14665at 3184.008 kb on + strand, within ABIE51_RS14665at 3184.009 kb on - strand, within ABIE51_RS14665at 3184.327 kb on - strandat 3184.493 kb on + strandat 3184.494 kb on - strandat 3184.799 kb on + strand, within ABIE51_RS14670at 3185.066 kb on + strand, within ABIE51_RS14670at 3185.067 kb on - strand, within ABIE51_RS14670at 3185.666 kb on + strand, within ABIE51_RS14670at 3185.786 kb on + strand, within ABIE51_RS14670at 3185.786 kb on + strand, within ABIE51_RS14670at 3185.786 kb on + strand, within ABIE51_RS14670at 3185.787 kb on - strand, within ABIE51_RS14670at 3185.924 kb on + strand, within ABIE51_RS14670at 3185.993 kb on + strand, within ABIE51_RS14670at 3185.993 kb on + strand, within ABIE51_RS14670at 3186.104 kb on + strand, within ABIE51_RS14670at 3186.105 kb on - strand, within ABIE51_RS14670at 3186.180 kb on - strand, within ABIE51_RS14670at 3186.578 kb on - strandat 3187.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A_HEPES agar plate with no fungus
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3,183,699 + ABIE51_RS14665 0.36 +1.0
3,183,699 + ABIE51_RS14665 0.36 -0.3
3,183,700 - ABIE51_RS14665 0.36 +0.8
3,183,700 - ABIE51_RS14665 0.36 +0.1
3,183,700 - ABIE51_RS14665 0.36 +0.7
3,183,840 + ABIE51_RS14665 0.49 -0.6
3,183,960 + ABIE51_RS14665 0.61 +0.3
3,183,961 - ABIE51_RS14665 0.61 -0.0
3,184,008 + ABIE51_RS14665 0.65 -0.4
3,184,009 - ABIE51_RS14665 0.65 -0.3
3,184,327 - -0.1
3,184,493 + +0.0
3,184,494 - -0.1
3,184,799 + ABIE51_RS14670 0.16 +0.3
3,185,066 + ABIE51_RS14670 0.29 -0.3
3,185,067 - ABIE51_RS14670 0.29 +0.5
3,185,666 + ABIE51_RS14670 0.57 +0.1
3,185,786 + ABIE51_RS14670 0.63 +0.4
3,185,786 + ABIE51_RS14670 0.63 +0.7
3,185,786 + ABIE51_RS14670 0.63 -0.1
3,185,787 - ABIE51_RS14670 0.63 +0.7
3,185,924 + ABIE51_RS14670 0.69 +0.0
3,185,993 + ABIE51_RS14670 0.73 +0.1
3,185,993 + ABIE51_RS14670 0.73 -1.8
3,186,104 + ABIE51_RS14670 0.78 +0.4
3,186,105 - ABIE51_RS14670 0.78 +0.1
3,186,180 - ABIE51_RS14670 0.81 -0.4
3,186,578 - -0.3
3,187,049 - +0.5

Or see this region's nucleotide sequence