Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS07440

Experiment: Parafilmed volatile R2A agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS07430 and ABIE51_RS07435 overlap by 4 nucleotidesABIE51_RS07435 and ABIE51_RS07440 overlap by 4 nucleotidesABIE51_RS07440 and ABIE51_RS07445 overlap by 11 nucleotides ABIE51_RS07430: ABIE51_RS07430 - NAD-dependent epimerase/dehydratase family protein, at 1,569,779 to 1,570,879 _RS07430 ABIE51_RS07435: ABIE51_RS07435 - zinc-binding dehydrogenase, at 1,570,876 to 1,571,838 _RS07435 ABIE51_RS07440: ABIE51_RS07440 - Gfo/Idh/MocA family oxidoreductase, at 1,571,835 to 1,572,848 _RS07440 ABIE51_RS07445: ABIE51_RS07445 - glycosyltransferase family 4 protein, at 1,572,838 to 1,573,977 _RS07445 Position (kb) 1571 1572 1573Strain fitness (log2 ratio) -1 0 1at 1570.899 kb on - strandat 1572.232 kb on - strand, within ABIE51_RS07440at 1572.352 kb on - strand, within ABIE51_RS07440at 1572.352 kb on - strand, within ABIE51_RS07440at 1572.616 kb on - strand, within ABIE51_RS07440at 1572.664 kb on - strand, within ABIE51_RS07440at 1572.837 kb on + strandat 1572.838 kb on - strandat 1573.034 kb on - strand, within ABIE51_RS07445at 1573.604 kb on - strand, within ABIE51_RS07445at 1573.624 kb on + strand, within ABIE51_RS07445at 1573.624 kb on + strand, within ABIE51_RS07445at 1573.624 kb on + strand, within ABIE51_RS07445at 1573.624 kb on + strand, within ABIE51_RS07445at 1573.808 kb on + strand, within ABIE51_RS07445at 1573.809 kb on - strand, within ABIE51_RS07445

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A agar plate with no fungus
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1,570,899 - -0.1
1,572,232 - ABIE51_RS07440 0.39 -0.1
1,572,352 - ABIE51_RS07440 0.51 +0.4
1,572,352 - ABIE51_RS07440 0.51 +0.6
1,572,616 - ABIE51_RS07440 0.77 -0.2
1,572,664 - ABIE51_RS07440 0.82 -0.4
1,572,837 + +0.4
1,572,838 - -0.6
1,573,034 - ABIE51_RS07445 0.17 +0.1
1,573,604 - ABIE51_RS07445 0.67 -0.3
1,573,624 + ABIE51_RS07445 0.69 -0.3
1,573,624 + ABIE51_RS07445 0.69 +0.2
1,573,624 + ABIE51_RS07445 0.69 -0.1
1,573,624 + ABIE51_RS07445 0.69 -0.0
1,573,808 + ABIE51_RS07445 0.85 -0.0
1,573,809 - ABIE51_RS07445 0.85 +0.1

Or see this region's nucleotide sequence