Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06205

Experiment: Parafilmed volatile R2A agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06200 and ABIE51_RS06205 are separated by 29 nucleotidesABIE51_RS06205 and ABIE51_RS06210 are separated by 39 nucleotidesABIE51_RS06210 and ABIE51_RS06215 are separated by 3 nucleotidesABIE51_RS06215 and ABIE51_RS06220 overlap by 4 nucleotides ABIE51_RS06200: ABIE51_RS06200 - glutamate--tRNA ligase, at 1,325,692 to 1,327,099 _RS06200 ABIE51_RS06205: ABIE51_RS06205 - transcriptional repressor, at 1,327,129 to 1,327,620 _RS06205 ABIE51_RS06210: ABIE51_RS06210 - hypothetical protein, at 1,327,660 to 1,328,088 _RS06210 ABIE51_RS06215: ABIE51_RS06215 - cupin domain-containing protein, at 1,328,092 to 1,328,451 _RS06215 ABIE51_RS06220: ABIE51_RS06220 - MFS transporter, at 1,328,448 to 1,329,710 _RS06220 Position (kb) 1327 1328Strain fitness (log2 ratio) -1 0 1at 1327.661 kb on + strandat 1327.661 kb on + strandat 1327.662 kb on - strandat 1327.662 kb on - strandat 1327.667 kb on + strandat 1327.667 kb on + strandat 1327.667 kb on + strandat 1327.667 kb on + strandat 1327.667 kb on + strandat 1327.667 kb on + strandat 1327.668 kb on - strandat 1327.668 kb on - strandat 1327.668 kb on - strandat 1327.668 kb on - strandat 1327.668 kb on - strandat 1327.668 kb on - strandat 1327.668 kb on - strandat 1327.668 kb on - strandat 1327.668 kb on - strandat 1327.668 kb on - strandat 1327.668 kb on - strandat 1327.668 kb on - strandat 1327.668 kb on - strandat 1327.733 kb on + strand, within ABIE51_RS06210at 1327.734 kb on - strand, within ABIE51_RS06210at 1327.734 kb on - strand, within ABIE51_RS06210at 1327.921 kb on + strand, within ABIE51_RS06210at 1327.921 kb on + strand, within ABIE51_RS06210at 1327.922 kb on - strand, within ABIE51_RS06210at 1328.030 kb on + strand, within ABIE51_RS06210at 1328.064 kb on + strandat 1328.064 kb on + strandat 1328.077 kb on + strandat 1328.078 kb on - strandat 1328.078 kb on - strandat 1328.551 kb on + strandat 1328.567 kb on - strandat 1328.567 kb on - strandat 1328.567 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A agar plate with no fungus
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1,327,661 + -0.1
1,327,661 + -0.1
1,327,662 - -0.2
1,327,662 - +0.5
1,327,667 + -0.2
1,327,667 + +0.5
1,327,667 + +1.3
1,327,667 + -0.6
1,327,667 + +0.5
1,327,667 + +0.0
1,327,668 - +0.5
1,327,668 - +0.6
1,327,668 - -0.2
1,327,668 - +0.1
1,327,668 - +0.7
1,327,668 - -0.2
1,327,668 - +0.1
1,327,668 - +0.2
1,327,668 - +0.1
1,327,668 - +0.1
1,327,668 - +0.4
1,327,668 - -0.1
1,327,668 - -0.1
1,327,733 + ABIE51_RS06210 0.17 +0.3
1,327,734 - ABIE51_RS06210 0.17 -1.0
1,327,734 - ABIE51_RS06210 0.17 +0.9
1,327,921 + ABIE51_RS06210 0.61 +0.1
1,327,921 + ABIE51_RS06210 0.61 +0.5
1,327,922 - ABIE51_RS06210 0.61 +0.0
1,328,030 + ABIE51_RS06210 0.86 +0.1
1,328,064 + -0.3
1,328,064 + -0.4
1,328,077 + +0.0
1,328,078 - -0.0
1,328,078 - -0.5
1,328,551 + -0.7
1,328,567 - -0.2
1,328,567 - +0.1
1,328,567 - -0.1

Or see this region's nucleotide sequence