Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS24255 and ECOLIN_RS24260 are separated by 204 nucleotides ECOLIN_RS24260 and ECOLIN_RS24265 are separated by 38 nucleotides ECOLIN_RS24265 and ECOLIN_RS24270 are separated by 90 nucleotides ECOLIN_RS24270 and ECOLIN_RS24275 are separated by 126 nucleotides
ECOLIN_RS24255: ECOLIN_RS24255 - adenylosuccinate synthase, at 4,877,705 to 4,879,003
_RS24255
ECOLIN_RS24260: ECOLIN_RS24260 - nitric oxide-sensing transcriptional repressor NsrR, at 4,879,208 to 4,879,633
_RS24260
ECOLIN_RS24265: ECOLIN_RS24265 - ribonuclease R, at 4,879,672 to 4,882,113
_RS24265
ECOLIN_RS24270: ECOLIN_RS24270 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 4,882,204 to 4,882,935
_RS24270
ECOLIN_RS24275: ECOLIN_RS24275 - DUF2170 family protein, at 4,883,062 to 4,883,463
_RS24275
Position (kb) 4879
4880
4881
4882
4883 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4878.899 kb on + strand at 4878.899 kb on + strand at 4878.964 kb on + strand at 4879.001 kb on + strand at 4879.051 kb on + strand at 4879.051 kb on + strand at 4879.051 kb on + strand at 4879.168 kb on + strand at 4879.169 kb on - strand at 4879.170 kb on + strand at 4879.171 kb on - strand at 4879.171 kb on - strand at 4879.254 kb on - strand, within ECOLIN_RS24260 at 4879.354 kb on + strand, within ECOLIN_RS24260 at 4879.368 kb on - strand, within ECOLIN_RS24260 at 4879.432 kb on + strand, within ECOLIN_RS24260 at 4879.432 kb on + strand, within ECOLIN_RS24260 at 4879.433 kb on - strand, within ECOLIN_RS24260 at 4879.571 kb on + strand, within ECOLIN_RS24260 at 4879.897 kb on + strand at 4879.897 kb on + strand at 4880.091 kb on + strand, within ECOLIN_RS24265 at 4880.281 kb on - strand, within ECOLIN_RS24265 at 4880.375 kb on - strand, within ECOLIN_RS24265 at 4880.521 kb on + strand, within ECOLIN_RS24265 at 4880.555 kb on + strand, within ECOLIN_RS24265 at 4880.581 kb on + strand, within ECOLIN_RS24265 at 4880.581 kb on + strand, within ECOLIN_RS24265 at 4880.581 kb on + strand, within ECOLIN_RS24265 at 4880.582 kb on - strand, within ECOLIN_RS24265 at 4880.584 kb on + strand, within ECOLIN_RS24265 at 4880.584 kb on + strand, within ECOLIN_RS24265 at 4880.584 kb on + strand, within ECOLIN_RS24265 at 4880.584 kb on + strand, within ECOLIN_RS24265 at 4880.584 kb on + strand, within ECOLIN_RS24265 at 4880.641 kb on + strand, within ECOLIN_RS24265 at 4880.783 kb on - strand, within ECOLIN_RS24265 at 4881.045 kb on - strand, within ECOLIN_RS24265 at 4881.370 kb on - strand, within ECOLIN_RS24265 at 4881.481 kb on + strand, within ECOLIN_RS24265 at 4881.713 kb on - strand, within ECOLIN_RS24265 at 4882.203 kb on - strand at 4882.511 kb on + strand, within ECOLIN_RS24270 at 4882.689 kb on + strand, within ECOLIN_RS24270 at 4882.750 kb on + strand, within ECOLIN_RS24270 at 4882.933 kb on + strand at 4882.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 4,878,899 + -3.0 4,878,899 + -3.7 4,878,964 + -4.9 4,879,001 + +0.2 4,879,051 + +0.3 4,879,051 + +0.2 4,879,051 + -0.3 4,879,168 + -0.3 4,879,169 - -3.4 4,879,170 + +0.6 4,879,171 - -0.9 4,879,171 - +0.3 4,879,254 - ECOLIN_RS24260 0.11 -0.2 4,879,354 + ECOLIN_RS24260 0.34 -1.1 4,879,368 - ECOLIN_RS24260 0.38 -0.5 4,879,432 + ECOLIN_RS24260 0.53 -0.9 4,879,432 + ECOLIN_RS24260 0.53 -0.8 4,879,433 - ECOLIN_RS24260 0.53 -0.7 4,879,571 + ECOLIN_RS24260 0.85 -0.8 4,879,897 + -0.0 4,879,897 + +0.5 4,880,091 + ECOLIN_RS24265 0.17 +0.1 4,880,281 - ECOLIN_RS24265 0.25 -0.1 4,880,375 - ECOLIN_RS24265 0.29 -0.0 4,880,521 + ECOLIN_RS24265 0.35 +0.6 4,880,555 + ECOLIN_RS24265 0.36 -0.1 4,880,581 + ECOLIN_RS24265 0.37 -0.3 4,880,581 + ECOLIN_RS24265 0.37 +0.1 4,880,581 + ECOLIN_RS24265 0.37 -0.2 4,880,582 - ECOLIN_RS24265 0.37 -0.4 4,880,584 + ECOLIN_RS24265 0.37 -0.1 4,880,584 + ECOLIN_RS24265 0.37 -0.6 4,880,584 + ECOLIN_RS24265 0.37 -0.1 4,880,584 + ECOLIN_RS24265 0.37 -0.3 4,880,584 + ECOLIN_RS24265 0.37 -0.7 4,880,641 + ECOLIN_RS24265 0.40 -1.1 4,880,783 - ECOLIN_RS24265 0.45 -0.2 4,881,045 - ECOLIN_RS24265 0.56 -0.8 4,881,370 - ECOLIN_RS24265 0.70 -2.3 4,881,481 + ECOLIN_RS24265 0.74 -0.4 4,881,713 - ECOLIN_RS24265 0.84 -0.1 4,882,203 - +0.5 4,882,511 + ECOLIN_RS24270 0.42 +2.0 4,882,689 + ECOLIN_RS24270 0.66 +0.5 4,882,750 + ECOLIN_RS24270 0.75 -2.5 4,882,933 + +0.1 4,882,989 - +1.1
Or see this region's nucleotide sequence