Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10935

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10930 and ECOLIN_RS10935 are separated by 112 nucleotidesECOLIN_RS10935 and ECOLIN_RS10940 are separated by 87 nucleotidesECOLIN_RS10940 and ECOLIN_RS10945 are separated by 45 nucleotidesECOLIN_RS10945 and ECOLIN_RS10950 are separated by 44 nucleotides ECOLIN_RS10930: ECOLIN_RS10930 - D-cysteine desulfhydrase, at 2,123,333 to 2,124,319 _RS10930 ECOLIN_RS10935: ECOLIN_RS10935 - cystine ABC transporter substrate-binding protein, at 2,124,432 to 2,125,232 _RS10935 ECOLIN_RS10940: ECOLIN_RS10940 - flagella biosynthesis regulatory protein FliZ, at 2,125,320 to 2,125,871 _RS10940 ECOLIN_RS10945: ECOLIN_RS10945 - sigma-70 family RNA polymerase sigma factor, at 2,125,917 to 2,126,081 _RS10945 ECOLIN_RS10950: ECOLIN_RS10950 - cystine ABC transporter substrate-binding protein, at 2,126,126 to 2,126,926 _RS10950 Position (kb) 2124 2125 2126Strain fitness (log2 ratio) -1 0 1at 2123.554 kb on - strand, within ECOLIN_RS10930at 2123.859 kb on + strand, within ECOLIN_RS10930

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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2,123,554 - ECOLIN_RS10930 0.22 -0.2
2,123,859 + ECOLIN_RS10930 0.53 -0.0

Or see this region's nucleotide sequence