Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10770

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10760 and ECOLIN_RS32340 are separated by 114 nucleotidesECOLIN_RS32340 and ECOLIN_RS10770 are separated by 45 nucleotidesECOLIN_RS10770 and ECOLIN_RS10775 are separated by 144 nucleotidesECOLIN_RS10775 and ECOLIN_RS10780 are separated by 20 nucleotides ECOLIN_RS10760: ECOLIN_RS10760 - protein-glutamate O-methyltransferase CheR, at 2,095,495 to 2,096,355 _RS10760 ECOLIN_RS32340: ECOLIN_RS32340 - Tar ligand binding domain-containing protein, at 2,096,470 to 2,096,600 _RS32340 ECOLIN_RS10770: ECOLIN_RS10770 - methyl-accepting chemotaxis protein II, at 2,096,646 to 2,098,307 _RS10770 ECOLIN_RS10775: ECOLIN_RS10775 - chemotaxis protein CheW, at 2,098,452 to 2,098,955 _RS10775 ECOLIN_RS10780: ECOLIN_RS10780 - chemotaxis protein CheA, at 2,098,976 to 2,100,940 _RS10780 Position (kb) 2096 2097 2098 2099Strain fitness (log2 ratio) -1 0 1at 2096.320 kb on + strandat 2096.355 kb on + strandat 2097.657 kb on - strand, within ECOLIN_RS10770at 2098.793 kb on + strand, within ECOLIN_RS10775at 2098.996 kb on + strandat 2099.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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2,096,320 + -0.7
2,096,355 + +0.1
2,097,657 - ECOLIN_RS10770 0.61 +0.3
2,098,793 + ECOLIN_RS10775 0.68 -0.7
2,098,996 + -0.2
2,099,105 - +0.9

Or see this region's nucleotide sequence