Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS03090 and ECOLIN_RS03095 are separated by 54 nucleotides ECOLIN_RS03095 and ECOLIN_RS03100 are separated by 243 nucleotides ECOLIN_RS03100 and ECOLIN_RS03105 are separated by 658 nucleotides
ECOLIN_RS03090: ECOLIN_RS03090 - tail fiber assembly protein, at 632,986 to 633,360
_RS03090
ECOLIN_RS03095: ECOLIN_RS03095 - class I SAM-dependent methyltransferase, at 633,415 to 634,071
_RS03095
ECOLIN_RS03100: ECOLIN_RS03100 - omptin family outer membrane protease OmpT, at 634,315 to 635,268
_RS03100
ECOLIN_RS03105: ECOLIN_RS03105 - DUF4434 family protein, at 635,927 to 636,817
_RS03105
Position (kb) 634
635
636 Strain fitness (log2 ratio) -1
0
1 at 633.446 kb on - strand at 633.446 kb on - strand at 633.494 kb on - strand, within ECOLIN_RS03095 at 633.496 kb on - strand, within ECOLIN_RS03095 at 633.682 kb on - strand, within ECOLIN_RS03095 at 633.682 kb on - strand, within ECOLIN_RS03095 at 634.224 kb on + strand at 634.225 kb on - strand at 634.280 kb on - strand at 635.507 kb on + strand at 635.520 kb on - strand at 635.750 kb on + strand at 636.137 kb on + strand, within ECOLIN_RS03105
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 633,446 - -0.0 633,446 - -0.1 633,494 - ECOLIN_RS03095 0.12 +0.5 633,496 - ECOLIN_RS03095 0.12 -0.1 633,682 - ECOLIN_RS03095 0.41 +0.6 633,682 - ECOLIN_RS03095 0.41 +0.9 634,224 + +0.6 634,225 - +0.0 634,280 - -0.1 635,507 + -0.3 635,520 - -0.3 635,750 + -0.1 636,137 + ECOLIN_RS03105 0.24 -0.1
Or see this region's nucleotide sequence