Experiment: Parafilmed volatile R2A agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS07125 and ABIE51_RS07130 are separated by 333 nucleotides ABIE51_RS07130 and ABIE51_RS07135 are separated by 85 nucleotides ABIE51_RS07135 and ABIE51_RS07140 are separated by 72 nucleotides ABIE51_RS07140 and ABIE51_RS07145 overlap by 4 nucleotides ABIE51_RS07145 and ABIE51_RS07150 overlap by 4 nucleotides ABIE51_RS07150 and ABIE51_RS07155 overlap by 8 nucleotides
ABIE51_RS07125: ABIE51_RS07125 - hypothetical protein, at 1,527,543 to 1,527,731
_RS07125
ABIE51_RS07130: ABIE51_RS07130 - hypothetical protein, at 1,528,065 to 1,528,634
_RS07130
ABIE51_RS07135: ABIE51_RS07135 - YdaS family helix-turn-helix protein, at 1,528,720 to 1,528,944
_RS07135
ABIE51_RS07140: ABIE51_RS07140 - hypothetical protein, at 1,529,017 to 1,529,382
_RS07140
ABIE51_RS07145: ABIE51_RS07145 - helix-turn-helix transcriptional regulator, at 1,529,379 to 1,529,672
_RS07145
ABIE51_RS07150: ABIE51_RS07150 - hypothetical protein, at 1,529,669 to 1,529,890
_RS07150
ABIE51_RS07155: ABIE51_RS07155 - hypothetical protein, at 1,529,883 to 1,530,185
_RS07155
Position (kb) 1528
1529 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1528.105 kb on - strand at 1528.105 kb on - strand at 1528.105 kb on - strand at 1528.105 kb on - strand at 1528.105 kb on - strand at 1528.105 kb on - strand at 1528.105 kb on - strand at 1528.105 kb on - strand at 1528.143 kb on - strand, within ABIE51_RS07130 at 1528.143 kb on - strand, within ABIE51_RS07130 at 1528.143 kb on - strand, within ABIE51_RS07130 at 1528.147 kb on - strand, within ABIE51_RS07130 at 1528.147 kb on - strand, within ABIE51_RS07130 at 1528.648 kb on - strand at 1528.802 kb on - strand, within ABIE51_RS07135 at 1528.864 kb on - strand, within ABIE51_RS07135 at 1529.587 kb on - strand, within ABIE51_RS07145 at 1529.650 kb on - strand at 1529.653 kb on - strand at 1529.653 kb on - strand at 1529.653 kb on - strand at 1529.653 kb on - strand at 1529.653 kb on - strand at 1529.653 kb on - strand at 1529.818 kb on - strand, within ABIE51_RS07150 at 1529.896 kb on - strand at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155 at 1529.929 kb on - strand, within ABIE51_RS07155
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile R2A agar plate with no fungus remove 1,528,105 - +0.5 1,528,105 - +0.1 1,528,105 - -0.1 1,528,105 - +0.1 1,528,105 - +0.2 1,528,105 - +1.0 1,528,105 - +0.6 1,528,105 - -0.5 1,528,143 - ABIE51_RS07130 0.14 -1.5 1,528,143 - ABIE51_RS07130 0.14 -0.2 1,528,143 - ABIE51_RS07130 0.14 +0.0 1,528,147 - ABIE51_RS07130 0.14 -0.4 1,528,147 - ABIE51_RS07130 0.14 +0.0 1,528,648 - -1.1 1,528,802 - ABIE51_RS07135 0.36 +0.6 1,528,864 - ABIE51_RS07135 0.64 +0.0 1,529,587 - ABIE51_RS07145 0.71 +0.2 1,529,650 - -3.5 1,529,653 - -2.0 1,529,653 - -3.2 1,529,653 - -1.2 1,529,653 - -1.2 1,529,653 - -3.3 1,529,653 - -1.6 1,529,818 - ABIE51_RS07150 0.67 -0.5 1,529,896 - +0.9 1,529,929 - ABIE51_RS07155 0.15 -0.4 1,529,929 - ABIE51_RS07155 0.15 -0.0 1,529,929 - ABIE51_RS07155 0.15 -0.1 1,529,929 - ABIE51_RS07155 0.15 +0.4 1,529,929 - ABIE51_RS07155 0.15 -0.4 1,529,929 - ABIE51_RS07155 0.15 -0.2 1,529,929 - ABIE51_RS07155 0.15 +0.1 1,529,929 - ABIE51_RS07155 0.15 -1.4 1,529,929 - ABIE51_RS07155 0.15 -0.3 1,529,929 - ABIE51_RS07155 0.15 -0.2 1,529,929 - ABIE51_RS07155 0.15 -1.6 1,529,929 - ABIE51_RS07155 0.15 -0.4 1,529,929 - ABIE51_RS07155 0.15 +0.5 1,529,929 - ABIE51_RS07155 0.15 +0.0 1,529,929 - ABIE51_RS07155 0.15 +0.1
Or see this region's nucleotide sequence