Experiment: Parafilmed volatile R2A agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS06030 and ABIE51_RS06035 are separated by 66 nucleotides ABIE51_RS06035 and ABIE51_RS06040 are separated by 136 nucleotides ABIE51_RS06040 and ABIE51_RS06045 are separated by 466 nucleotides
ABIE51_RS06030: ABIE51_RS06030 - hypothetical protein, at 1,285,709 to 1,286,263
_RS06030
ABIE51_RS06035: ABIE51_RS06035 - glutathione S-transferase N-terminal domain-containing protein, at 1,286,330 to 1,286,941
_RS06035
ABIE51_RS06040: ABIE51_RS06040 - cell wall hydrolase, at 1,287,078 to 1,287,536
_RS06040
ABIE51_RS06045: ABIE51_RS06045 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 1,288,003 to 1,290,072
_RS06045
Position (kb) 1287
1288 Strain fitness (log2 ratio) -1
0
1
2
3 at 1286.114 kb on + strand, within ABIE51_RS06030 at 1286.114 kb on + strand, within ABIE51_RS06030 at 1286.114 kb on + strand, within ABIE51_RS06030 at 1286.115 kb on - strand, within ABIE51_RS06030 at 1286.279 kb on - strand at 1286.332 kb on - strand at 1286.460 kb on + strand, within ABIE51_RS06035 at 1286.460 kb on + strand, within ABIE51_RS06035 at 1286.460 kb on + strand, within ABIE51_RS06035 at 1286.460 kb on + strand, within ABIE51_RS06035 at 1286.460 kb on + strand, within ABIE51_RS06035 at 1286.460 kb on + strand, within ABIE51_RS06035 at 1286.460 kb on + strand, within ABIE51_RS06035 at 1286.460 kb on + strand, within ABIE51_RS06035 at 1286.460 kb on + strand, within ABIE51_RS06035 at 1286.460 kb on + strand, within ABIE51_RS06035 at 1286.461 kb on - strand, within ABIE51_RS06035 at 1286.461 kb on - strand, within ABIE51_RS06035 at 1286.461 kb on - strand, within ABIE51_RS06035 at 1286.461 kb on - strand, within ABIE51_RS06035 at 1286.461 kb on - strand, within ABIE51_RS06035 at 1286.461 kb on - strand, within ABIE51_RS06035 at 1286.461 kb on - strand, within ABIE51_RS06035 at 1286.461 kb on - strand, within ABIE51_RS06035 at 1286.461 kb on - strand, within ABIE51_RS06035 at 1286.461 kb on - strand, within ABIE51_RS06035 at 1286.466 kb on + strand, within ABIE51_RS06035 at 1286.466 kb on + strand, within ABIE51_RS06035 at 1286.467 kb on - strand, within ABIE51_RS06035 at 1286.467 kb on - strand, within ABIE51_RS06035 at 1286.467 kb on - strand, within ABIE51_RS06035 at 1286.467 kb on - strand, within ABIE51_RS06035 at 1286.478 kb on + strand, within ABIE51_RS06035 at 1286.478 kb on + strand, within ABIE51_RS06035 at 1286.478 kb on + strand, within ABIE51_RS06035 at 1286.479 kb on - strand, within ABIE51_RS06035 at 1286.479 kb on - strand, within ABIE51_RS06035 at 1286.739 kb on + strand, within ABIE51_RS06035 at 1286.739 kb on + strand, within ABIE51_RS06035 at 1286.739 kb on + strand, within ABIE51_RS06035 at 1286.739 kb on + strand, within ABIE51_RS06035 at 1286.739 kb on + strand, within ABIE51_RS06035 at 1286.739 kb on + strand, within ABIE51_RS06035 at 1286.739 kb on + strand, within ABIE51_RS06035 at 1286.740 kb on - strand, within ABIE51_RS06035 at 1286.740 kb on - strand, within ABIE51_RS06035 at 1286.740 kb on - strand, within ABIE51_RS06035 at 1286.740 kb on - strand, within ABIE51_RS06035 at 1286.740 kb on - strand, within ABIE51_RS06035 at 1286.932 kb on - strand at 1286.932 kb on - strand at 1286.932 kb on - strand at 1286.932 kb on - strand at 1286.932 kb on - strand at 1286.932 kb on - strand at 1286.932 kb on - strand at 1286.932 kb on - strand at 1286.978 kb on + strand at 1286.978 kb on + strand at 1286.978 kb on + strand at 1286.978 kb on + strand at 1286.979 kb on - strand at 1286.979 kb on - strand at 1286.979 kb on - strand at 1286.979 kb on - strand at 1287.079 kb on + strand at 1287.079 kb on + strand at 1287.079 kb on + strand at 1287.080 kb on - strand at 1287.110 kb on + strand at 1287.110 kb on + strand at 1287.110 kb on + strand at 1287.110 kb on + strand at 1287.110 kb on + strand at 1287.111 kb on - strand at 1287.111 kb on - strand at 1287.111 kb on - strand at 1287.112 kb on + strand at 1287.112 kb on + strand at 1287.112 kb on + strand at 1287.112 kb on + strand at 1287.112 kb on + strand at 1287.112 kb on + strand at 1287.112 kb on + strand at 1287.112 kb on + strand at 1287.112 kb on + strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.113 kb on - strand at 1287.145 kb on + strand, within ABIE51_RS06040 at 1287.454 kb on + strand, within ABIE51_RS06040 at 1287.454 kb on + strand, within ABIE51_RS06040 at 1287.454 kb on + strand, within ABIE51_RS06040 at 1287.454 kb on + strand, within ABIE51_RS06040 at 1287.455 kb on - strand, within ABIE51_RS06040 at 1287.539 kb on - strand at 1287.539 kb on - strand at 1287.539 kb on - strand at 1287.539 kb on - strand at 1287.626 kb on + strand at 1287.626 kb on + strand at 1287.626 kb on + strand at 1287.627 kb on - strand at 1287.753 kb on - strand at 1287.767 kb on - strand at 1287.851 kb on + strand at 1288.232 kb on + strand, within ABIE51_RS06045 at 1288.232 kb on + strand, within ABIE51_RS06045 at 1288.232 kb on + strand, within ABIE51_RS06045 at 1288.232 kb on + strand, within ABIE51_RS06045 at 1288.232 kb on + strand, within ABIE51_RS06045 at 1288.407 kb on - strand, within ABIE51_RS06045
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile R2A agar plate with no fungus remove 1,286,114 + ABIE51_RS06030 0.73 -0.1 1,286,114 + ABIE51_RS06030 0.73 -0.1 1,286,114 + ABIE51_RS06030 0.73 -0.4 1,286,115 - ABIE51_RS06030 0.73 +0.4 1,286,279 - +0.7 1,286,332 - +0.2 1,286,460 + ABIE51_RS06035 0.21 +0.4 1,286,460 + ABIE51_RS06035 0.21 +0.2 1,286,460 + ABIE51_RS06035 0.21 +0.3 1,286,460 + ABIE51_RS06035 0.21 -0.0 1,286,460 + ABIE51_RS06035 0.21 +0.1 1,286,460 + ABIE51_RS06035 0.21 -1.4 1,286,460 + ABIE51_RS06035 0.21 -0.0 1,286,460 + ABIE51_RS06035 0.21 -0.5 1,286,460 + ABIE51_RS06035 0.21 +0.1 1,286,460 + ABIE51_RS06035 0.21 -0.1 1,286,461 - ABIE51_RS06035 0.21 +2.2 1,286,461 - ABIE51_RS06035 0.21 +0.3 1,286,461 - ABIE51_RS06035 0.21 +0.0 1,286,461 - ABIE51_RS06035 0.21 -0.2 1,286,461 - ABIE51_RS06035 0.21 -0.4 1,286,461 - ABIE51_RS06035 0.21 +3.6 1,286,461 - ABIE51_RS06035 0.21 +0.0 1,286,461 - ABIE51_RS06035 0.21 -0.5 1,286,461 - ABIE51_RS06035 0.21 -0.3 1,286,461 - ABIE51_RS06035 0.21 -0.5 1,286,466 + ABIE51_RS06035 0.22 +0.0 1,286,466 + ABIE51_RS06035 0.22 -0.4 1,286,467 - ABIE51_RS06035 0.22 -0.3 1,286,467 - ABIE51_RS06035 0.22 +0.1 1,286,467 - ABIE51_RS06035 0.22 -0.3 1,286,467 - ABIE51_RS06035 0.22 +0.2 1,286,478 + ABIE51_RS06035 0.24 +0.2 1,286,478 + ABIE51_RS06035 0.24 +0.0 1,286,478 + ABIE51_RS06035 0.24 +0.5 1,286,479 - ABIE51_RS06035 0.24 -0.6 1,286,479 - ABIE51_RS06035 0.24 +0.3 1,286,739 + ABIE51_RS06035 0.67 +0.0 1,286,739 + ABIE51_RS06035 0.67 -0.2 1,286,739 + ABIE51_RS06035 0.67 +0.1 1,286,739 + ABIE51_RS06035 0.67 +0.2 1,286,739 + ABIE51_RS06035 0.67 -0.4 1,286,739 + ABIE51_RS06035 0.67 +0.8 1,286,739 + ABIE51_RS06035 0.67 -0.2 1,286,740 - ABIE51_RS06035 0.67 -1.0 1,286,740 - ABIE51_RS06035 0.67 -0.4 1,286,740 - ABIE51_RS06035 0.67 +0.3 1,286,740 - ABIE51_RS06035 0.67 +1.7 1,286,740 - ABIE51_RS06035 0.67 +0.4 1,286,932 - +0.4 1,286,932 - -0.0 1,286,932 - -0.5 1,286,932 - +0.0 1,286,932 - -0.2 1,286,932 - +0.2 1,286,932 - +0.1 1,286,932 - +0.5 1,286,978 + -1.2 1,286,978 + -0.1 1,286,978 + +0.0 1,286,978 + -0.2 1,286,979 - -0.0 1,286,979 - -1.0 1,286,979 - +0.6 1,286,979 - +0.7 1,287,079 + -0.0 1,287,079 + +0.0 1,287,079 + -0.3 1,287,080 - +0.2 1,287,110 + -0.6 1,287,110 + +0.7 1,287,110 + -0.6 1,287,110 + -0.4 1,287,110 + +0.1 1,287,111 - -0.6 1,287,111 - +0.1 1,287,111 - -0.4 1,287,112 + -0.7 1,287,112 + +0.1 1,287,112 + -0.2 1,287,112 + -1.0 1,287,112 + -0.3 1,287,112 + -0.4 1,287,112 + +0.9 1,287,112 + -0.2 1,287,112 + +0.7 1,287,113 - +0.9 1,287,113 - -0.1 1,287,113 - -0.3 1,287,113 - -0.5 1,287,113 - -0.2 1,287,113 - -0.2 1,287,113 - -0.3 1,287,113 - +0.2 1,287,113 - -0.5 1,287,113 - -0.6 1,287,113 - -0.3 1,287,113 - +0.1 1,287,113 - +0.7 1,287,113 - -0.4 1,287,113 - +0.1 1,287,113 - -1.0 1,287,113 - -1.1 1,287,113 - -0.2 1,287,113 - -0.6 1,287,113 - -1.2 1,287,145 + ABIE51_RS06040 0.15 -0.5 1,287,454 + ABIE51_RS06040 0.82 -0.4 1,287,454 + ABIE51_RS06040 0.82 -1.1 1,287,454 + ABIE51_RS06040 0.82 -1.1 1,287,454 + ABIE51_RS06040 0.82 -0.6 1,287,455 - ABIE51_RS06040 0.82 +0.0 1,287,539 - -0.6 1,287,539 - -0.6 1,287,539 - +0.2 1,287,539 - -0.6 1,287,626 + -0.9 1,287,626 + +0.2 1,287,626 + +0.1 1,287,627 - -0.3 1,287,753 - -0.0 1,287,767 - -0.6 1,287,851 + -0.3 1,288,232 + ABIE51_RS06045 0.11 +0.3 1,288,232 + ABIE51_RS06045 0.11 +1.2 1,288,232 + ABIE51_RS06045 0.11 -0.0 1,288,232 + ABIE51_RS06045 0.11 -0.1 1,288,232 + ABIE51_RS06045 0.11 +1.0 1,288,407 - ABIE51_RS06045 0.20 -0.1
Or see this region's nucleotide sequence