Experiment: Parafilmed volatile R2A agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02045 and ABIE51_RS02050 are separated by 229 nucleotides ABIE51_RS02050 and ABIE51_RS02055 are separated by 37 nucleotides ABIE51_RS02055 and ABIE51_RS02060 are separated by 645 nucleotides
ABIE51_RS02045: ABIE51_RS02045 - cytochrome d ubiquinol oxidase subunit II, at 455,058 to 456,071
_RS02045
ABIE51_RS02050: ABIE51_RS02050 - YcgL domain-containing protein, at 456,301 to 456,570
_RS02050
ABIE51_RS02055: ABIE51_RS02055 - ankyrin repeat domain-containing protein, at 456,608 to 459,895
_RS02055
ABIE51_RS02060: ABIE51_RS02060 - monovalent cation:proton antiporter-2 (CPA2) family protein, at 460,541 to 462,370
_RS02060
Position (kb) 456
457
458
459
460 Strain fitness (log2 ratio) -2
-1
0
1 at 456.009 kb on + strand at 456.009 kb on + strand at 456.015 kb on + strand at 456.015 kb on + strand at 456.015 kb on + strand at 456.015 kb on + strand at 456.015 kb on + strand at 456.015 kb on + strand at 456.015 kb on + strand at 456.015 kb on + strand at 456.016 kb on - strand at 456.016 kb on - strand at 456.016 kb on - strand at 456.016 kb on - strand at 456.016 kb on - strand at 456.016 kb on - strand at 456.024 kb on + strand at 456.024 kb on + strand at 456.024 kb on + strand at 456.025 kb on - strand at 456.025 kb on - strand at 456.025 kb on - strand at 456.064 kb on - strand at 456.064 kb on - strand at 456.243 kb on + strand at 456.243 kb on + strand at 456.243 kb on + strand at 456.243 kb on + strand at 456.244 kb on - strand at 456.244 kb on - strand at 456.310 kb on + strand at 456.310 kb on + strand at 456.310 kb on + strand at 456.310 kb on + strand at 456.311 kb on - strand at 456.311 kb on - strand at 456.311 kb on - strand at 456.311 kb on - strand at 456.311 kb on - strand at 456.316 kb on + strand at 456.316 kb on + strand at 456.316 kb on + strand at 456.316 kb on + strand at 456.316 kb on + strand at 456.317 kb on - strand at 456.317 kb on - strand at 456.343 kb on + strand, within ABIE51_RS02050 at 456.343 kb on + strand, within ABIE51_RS02050 at 456.343 kb on + strand, within ABIE51_RS02050 at 456.343 kb on + strand, within ABIE51_RS02050 at 456.343 kb on + strand, within ABIE51_RS02050 at 456.344 kb on - strand, within ABIE51_RS02050 at 456.344 kb on - strand, within ABIE51_RS02050 at 456.344 kb on - strand, within ABIE51_RS02050 at 456.344 kb on - strand, within ABIE51_RS02050 at 456.344 kb on - strand, within ABIE51_RS02050 at 456.349 kb on + strand, within ABIE51_RS02050 at 456.349 kb on + strand, within ABIE51_RS02050 at 456.350 kb on - strand, within ABIE51_RS02050 at 456.350 kb on - strand, within ABIE51_RS02050 at 457.287 kb on - strand, within ABIE51_RS02055 at 458.271 kb on - strand, within ABIE51_RS02055 at 459.455 kb on + strand, within ABIE51_RS02055 at 459.455 kb on + strand, within ABIE51_RS02055 at 459.455 kb on + strand, within ABIE51_RS02055 at 459.455 kb on + strand, within ABIE51_RS02055 at 459.455 kb on + strand, within ABIE51_RS02055 at 459.455 kb on + strand, within ABIE51_RS02055 at 459.455 kb on + strand, within ABIE51_RS02055 at 459.456 kb on - strand, within ABIE51_RS02055 at 459.456 kb on - strand, within ABIE51_RS02055 at 459.456 kb on - strand, within ABIE51_RS02055 at 459.456 kb on - strand, within ABIE51_RS02055 at 459.894 kb on - strand at 459.901 kb on - strand at 460.225 kb on + strand at 460.225 kb on + strand at 460.225 kb on + strand at 460.226 kb on - strand at 460.357 kb on - strand at 460.519 kb on + strand at 460.534 kb on + strand at 460.534 kb on + strand at 460.534 kb on + strand at 460.534 kb on + strand at 460.535 kb on - strand at 460.535 kb on - strand at 460.535 kb on - strand at 460.815 kb on + strand, within ABIE51_RS02060 at 460.815 kb on + strand, within ABIE51_RS02060 at 460.815 kb on + strand, within ABIE51_RS02060 at 460.815 kb on + strand, within ABIE51_RS02060 at 460.815 kb on + strand, within ABIE51_RS02060 at 460.815 kb on + strand, within ABIE51_RS02060 at 460.815 kb on + strand, within ABIE51_RS02060 at 460.816 kb on - strand, within ABIE51_RS02060 at 460.816 kb on - strand, within ABIE51_RS02060
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile R2A agar plate with no fungus remove 456,009 + -0.5 456,009 + +0.3 456,015 + +0.2 456,015 + +0.1 456,015 + +0.0 456,015 + +0.0 456,015 + +0.1 456,015 + +0.3 456,015 + -0.2 456,015 + -0.1 456,016 - -0.3 456,016 - +0.3 456,016 - +0.2 456,016 - -1.2 456,016 - +0.4 456,016 - -0.2 456,024 + +0.5 456,024 + +0.0 456,024 + +0.3 456,025 - -0.2 456,025 - -0.1 456,025 - -1.8 456,064 - +0.4 456,064 - +0.2 456,243 + -0.8 456,243 + +0.9 456,243 + -0.5 456,243 + -0.3 456,244 - -0.3 456,244 - -0.8 456,310 + +0.1 456,310 + +0.2 456,310 + +0.3 456,310 + +0.4 456,311 - -0.1 456,311 - +0.5 456,311 - +0.1 456,311 - +0.4 456,311 - +0.6 456,316 + -0.0 456,316 + +0.2 456,316 + +0.3 456,316 + -2.1 456,316 + +0.1 456,317 - +0.5 456,317 - -0.4 456,343 + ABIE51_RS02050 0.16 +0.3 456,343 + ABIE51_RS02050 0.16 +0.4 456,343 + ABIE51_RS02050 0.16 +0.7 456,343 + ABIE51_RS02050 0.16 +1.2 456,343 + ABIE51_RS02050 0.16 +0.1 456,344 - ABIE51_RS02050 0.16 +0.4 456,344 - ABIE51_RS02050 0.16 +0.3 456,344 - ABIE51_RS02050 0.16 -0.3 456,344 - ABIE51_RS02050 0.16 +1.3 456,344 - ABIE51_RS02050 0.16 +0.4 456,349 + ABIE51_RS02050 0.18 +0.5 456,349 + ABIE51_RS02050 0.18 +0.1 456,350 - ABIE51_RS02050 0.18 +0.6 456,350 - ABIE51_RS02050 0.18 +0.1 457,287 - ABIE51_RS02055 0.21 -1.2 458,271 - ABIE51_RS02055 0.51 -0.1 459,455 + ABIE51_RS02055 0.87 +0.8 459,455 + ABIE51_RS02055 0.87 +1.5 459,455 + ABIE51_RS02055 0.87 +0.1 459,455 + ABIE51_RS02055 0.87 -0.1 459,455 + ABIE51_RS02055 0.87 -0.5 459,455 + ABIE51_RS02055 0.87 +0.5 459,455 + ABIE51_RS02055 0.87 +0.2 459,456 - ABIE51_RS02055 0.87 +0.7 459,456 - ABIE51_RS02055 0.87 +0.1 459,456 - ABIE51_RS02055 0.87 -1.4 459,456 - ABIE51_RS02055 0.87 +0.4 459,894 - +0.1 459,901 - -0.1 460,225 + +0.1 460,225 + +0.6 460,225 + -0.5 460,226 - +0.0 460,357 - +0.3 460,519 + +0.9 460,534 + -0.3 460,534 + +0.5 460,534 + -0.0 460,534 + +0.1 460,535 - +1.6 460,535 - +0.2 460,535 - -0.7 460,815 + ABIE51_RS02060 0.15 +0.3 460,815 + ABIE51_RS02060 0.15 +0.8 460,815 + ABIE51_RS02060 0.15 -0.1 460,815 + ABIE51_RS02060 0.15 +0.1 460,815 + ABIE51_RS02060 0.15 +0.3 460,815 + ABIE51_RS02060 0.15 -0.3 460,815 + ABIE51_RS02060 0.15 -0.9 460,816 - ABIE51_RS02060 0.15 +0.8 460,816 - ABIE51_RS02060 0.15 +0.5
Or see this region's nucleotide sequence