Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS12645

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS12635 and ECOLIN_RS12640 are separated by 73 nucleotidesECOLIN_RS12640 and ECOLIN_RS12645 are separated by 3 nucleotidesECOLIN_RS12645 and ECOLIN_RS12650 are separated by 267 nucleotides ECOLIN_RS12635: ECOLIN_RS12635 - YeiH family protein, at 2,513,465 to 2,514,514 _RS12635 ECOLIN_RS12640: ECOLIN_RS12640 - deoxyribonuclease IV, at 2,514,588 to 2,515,445 _RS12640 ECOLIN_RS12645: ECOLIN_RS12645 - sugar kinase, at 2,515,449 to 2,516,537 _RS12645 ECOLIN_RS12650: ECOLIN_RS12650 - ribosylpyrimidine nucleosidase, at 2,516,805 to 2,517,746 _RS12650 Position (kb) 2515 2516 2517Strain fitness (log2 ratio) -1 0 1at 2514.595 kb on - strandat 2514.863 kb on - strand, within ECOLIN_RS12640at 2515.049 kb on - strand, within ECOLIN_RS12640at 2516.871 kb on - strandat 2516.972 kb on - strand, within ECOLIN_RS12650

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,514,595 - +0.4
2,514,863 - ECOLIN_RS12640 0.32 +0.4
2,515,049 - ECOLIN_RS12640 0.54 -0.5
2,516,871 - +1.1
2,516,972 - ECOLIN_RS12650 0.18 -1.3

Or see this region's nucleotide sequence