Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10780

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10770 and ECOLIN_RS10775 are separated by 144 nucleotidesECOLIN_RS10775 and ECOLIN_RS10780 are separated by 20 nucleotidesECOLIN_RS10780 and ECOLIN_RS10785 are separated by 4 nucleotidesECOLIN_RS10785 and ECOLIN_RS10790 overlap by 4 nucleotides ECOLIN_RS10770: ECOLIN_RS10770 - methyl-accepting chemotaxis protein II, at 2,096,646 to 2,098,307 _RS10770 ECOLIN_RS10775: ECOLIN_RS10775 - chemotaxis protein CheW, at 2,098,452 to 2,098,955 _RS10775 ECOLIN_RS10780: ECOLIN_RS10780 - chemotaxis protein CheA, at 2,098,976 to 2,100,940 _RS10780 ECOLIN_RS10785: ECOLIN_RS10785 - flagellar motor protein MotB, at 2,100,945 to 2,101,871 _RS10785 ECOLIN_RS10790: ECOLIN_RS10790 - flagellar motor stator protein MotA, at 2,101,868 to 2,102,755 _RS10790 Position (kb) 2098 2099 2100 2101Strain fitness (log2 ratio) -1 0 1at 2098.793 kb on + strand, within ECOLIN_RS10775at 2098.996 kb on + strandat 2099.105 kb on - strandat 2100.927 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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2,098,793 + ECOLIN_RS10775 0.68 -0.6
2,098,996 + -0.6
2,099,105 - +0.7
2,100,927 - -1.3

Or see this region's nucleotide sequence