Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS04335 and ECOLIN_RS31285 are separated by 234 nucleotides ECOLIN_RS31285 and ECOLIN_RS04340 are separated by 52 nucleotides ECOLIN_RS04340 and ECOLIN_RS04345 are separated by 49 nucleotides ECOLIN_RS04345 and ECOLIN_RS04350 are separated by 271 nucleotides ECOLIN_RS04350 and ECOLIN_RS04355 are separated by 185 nucleotides
ECOLIN_RS04335: ECOLIN_RS04335 - threonine/homoserine exporter RhtA, at 876,672 to 877,559
_RS04335
ECOLIN_RS31285: ECOLIN_RS31285 - protein YliM, at 877,794 to 877,859
_RS31285
ECOLIN_RS04340: ECOLIN_RS04340 - outer membrane protein OmpX, at 877,912 to 878,427
_RS04340
ECOLIN_RS04345: ECOLIN_RS04345 - phosphoethanolamine transferase, at 878,477 to 880,060
_RS04345
ECOLIN_RS04350: ECOLIN_RS04350 - manganase accumulation protein MntS, at 880,332 to 880,460
_RS04350
ECOLIN_RS04355: ECOLIN_RS04355 - manganese-binding transcriptional regulator MntR, at 880,646 to 881,113
_RS04355
Position (kb) 878
879
880
881 Strain fitness (log2 ratio) -2
-1
0
1 at 877.546 kb on - strand at 877.874 kb on - strand at 877.994 kb on + strand, within ECOLIN_RS04340 at 878.068 kb on + strand, within ECOLIN_RS04340 at 878.149 kb on + strand, within ECOLIN_RS04340 at 878.149 kb on + strand, within ECOLIN_RS04340 at 878.272 kb on + strand, within ECOLIN_RS04340 at 878.598 kb on - strand at 880.166 kb on - strand at 880.389 kb on - strand, within ECOLIN_RS04350 at 880.389 kb on - strand, within ECOLIN_RS04350 at 880.402 kb on - strand, within ECOLIN_RS04350 at 880.408 kb on - strand, within ECOLIN_RS04350 at 880.440 kb on - strand, within ECOLIN_RS04350 at 880.511 kb on - strand at 880.541 kb on + strand at 880.615 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 877,546 - -0.1 877,874 - +0.1 877,994 + ECOLIN_RS04340 0.16 -0.0 878,068 + ECOLIN_RS04340 0.30 -0.0 878,149 + ECOLIN_RS04340 0.46 +0.2 878,149 + ECOLIN_RS04340 0.46 -0.3 878,272 + ECOLIN_RS04340 0.70 -0.5 878,598 - -2.2 880,166 - +0.9 880,389 - ECOLIN_RS04350 0.44 -0.3 880,389 - ECOLIN_RS04350 0.44 -0.6 880,402 - ECOLIN_RS04350 0.54 -0.1 880,408 - ECOLIN_RS04350 0.59 -0.2 880,440 - ECOLIN_RS04350 0.84 +0.2 880,511 - -0.3 880,541 + -0.3 880,615 + +0.3
Or see this region's nucleotide sequence