Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06020

Experiment: Parafilmed volatile R2A agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06015 and ABIE51_RS06020 are separated by 261 nucleotidesABIE51_RS06020 and ABIE51_RS06025 are separated by 78 nucleotides ABIE51_RS06015: ABIE51_RS06015 - methylisocitrate lyase, at 1,280,356 to 1,281,243 _RS06015 ABIE51_RS06020: ABIE51_RS06020 - 2-methylcitrate synthase, at 1,281,505 to 1,282,650 _RS06020 ABIE51_RS06025: ABIE51_RS06025 - TonB-dependent receptor, at 1,282,729 to 1,285,332 _RS06025 Position (kb) 1281 1282 1283Strain fitness (log2 ratio) -1 0 1 2at 1280.885 kb on - strand, within ABIE51_RS06015at 1280.885 kb on - strand, within ABIE51_RS06015at 1281.058 kb on + strand, within ABIE51_RS06015at 1281.241 kb on + strandat 1281.241 kb on + strandat 1281.241 kb on + strandat 1281.241 kb on + strandat 1281.242 kb on - strandat 1281.242 kb on - strandat 1281.242 kb on - strandat 1281.242 kb on - strandat 1281.275 kb on + strandat 1281.275 kb on + strandat 1281.275 kb on + strandat 1281.420 kb on + strandat 1281.421 kb on - strandat 1281.507 kb on - strandat 1281.613 kb on + strandat 1281.622 kb on + strand, within ABIE51_RS06020at 1281.622 kb on + strand, within ABIE51_RS06020at 1281.623 kb on - strand, within ABIE51_RS06020at 1281.623 kb on - strand, within ABIE51_RS06020at 1281.718 kb on + strand, within ABIE51_RS06020at 1281.718 kb on + strand, within ABIE51_RS06020at 1281.718 kb on + strand, within ABIE51_RS06020at 1281.718 kb on + strand, within ABIE51_RS06020at 1281.718 kb on + strand, within ABIE51_RS06020at 1281.719 kb on - strand, within ABIE51_RS06020at 1281.719 kb on - strand, within ABIE51_RS06020at 1281.719 kb on - strand, within ABIE51_RS06020at 1281.719 kb on - strand, within ABIE51_RS06020at 1281.719 kb on - strand, within ABIE51_RS06020at 1281.906 kb on + strand, within ABIE51_RS06020at 1281.906 kb on + strand, within ABIE51_RS06020at 1281.906 kb on + strand, within ABIE51_RS06020at 1281.907 kb on - strand, within ABIE51_RS06020at 1281.928 kb on + strand, within ABIE51_RS06020at 1281.928 kb on + strand, within ABIE51_RS06020at 1281.928 kb on + strand, within ABIE51_RS06020at 1281.929 kb on - strand, within ABIE51_RS06020at 1281.929 kb on - strand, within ABIE51_RS06020at 1281.929 kb on - strand, within ABIE51_RS06020at 1281.929 kb on - strand, within ABIE51_RS06020at 1282.073 kb on - strand, within ABIE51_RS06020at 1282.312 kb on + strand, within ABIE51_RS06020at 1282.312 kb on + strand, within ABIE51_RS06020at 1282.312 kb on + strand, within ABIE51_RS06020at 1282.312 kb on + strand, within ABIE51_RS06020at 1282.313 kb on - strand, within ABIE51_RS06020at 1282.313 kb on - strand, within ABIE51_RS06020at 1282.313 kb on - strand, within ABIE51_RS06020at 1282.313 kb on - strand, within ABIE51_RS06020at 1282.313 kb on - strand, within ABIE51_RS06020at 1282.462 kb on + strand, within ABIE51_RS06020at 1282.463 kb on - strand, within ABIE51_RS06020at 1282.463 kb on - strand, within ABIE51_RS06020at 1282.477 kb on + strand, within ABIE51_RS06020at 1282.477 kb on + strand, within ABIE51_RS06020at 1282.478 kb on - strand, within ABIE51_RS06020at 1282.603 kb on + strandat 1282.603 kb on + strandat 1282.604 kb on - strandat 1282.604 kb on - strandat 1282.627 kb on + strandat 1282.628 kb on - strandat 1282.740 kb on - strandat 1282.760 kb on + strandat 1282.760 kb on + strandat 1282.761 kb on - strandat 1282.761 kb on - strandat 1282.778 kb on + strandat 1282.779 kb on - strandat 1282.793 kb on + strandat 1282.794 kb on - strandat 1282.895 kb on + strandat 1282.895 kb on + strandat 1282.904 kb on + strandat 1282.904 kb on + strandat 1282.905 kb on - strandat 1282.985 kb on + strandat 1282.985 kb on + strandat 1282.986 kb on - strandat 1282.988 kb on + strandat 1282.988 kb on + strandat 1283.084 kb on + strand, within ABIE51_RS06025at 1283.123 kb on + strand, within ABIE51_RS06025at 1283.124 kb on - strand, within ABIE51_RS06025at 1283.124 kb on - strand, within ABIE51_RS06025at 1283.124 kb on - strand, within ABIE51_RS06025at 1283.124 kb on - strand, within ABIE51_RS06025at 1283.141 kb on + strand, within ABIE51_RS06025at 1283.142 kb on - strand, within ABIE51_RS06025at 1283.142 kb on - strand, within ABIE51_RS06025at 1283.158 kb on + strand, within ABIE51_RS06025at 1283.249 kb on + strand, within ABIE51_RS06025at 1283.249 kb on + strand, within ABIE51_RS06025at 1283.249 kb on + strand, within ABIE51_RS06025at 1283.250 kb on - strand, within ABIE51_RS06025at 1283.250 kb on - strand, within ABIE51_RS06025at 1283.250 kb on - strand, within ABIE51_RS06025at 1283.363 kb on + strand, within ABIE51_RS06025at 1283.363 kb on + strand, within ABIE51_RS06025at 1283.364 kb on - strand, within ABIE51_RS06025at 1283.364 kb on - strand, within ABIE51_RS06025at 1283.364 kb on - strand, within ABIE51_RS06025at 1283.364 kb on - strand, within ABIE51_RS06025at 1283.417 kb on + strand, within ABIE51_RS06025at 1283.417 kb on + strand, within ABIE51_RS06025at 1283.525 kb on + strand, within ABIE51_RS06025at 1283.526 kb on - strand, within ABIE51_RS06025

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A agar plate with no fungus
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1,280,885 - ABIE51_RS06015 0.60 +0.8
1,280,885 - ABIE51_RS06015 0.60 -0.2
1,281,058 + ABIE51_RS06015 0.79 -1.2
1,281,241 + +0.1
1,281,241 + -0.0
1,281,241 + -0.8
1,281,241 + +0.4
1,281,242 - +0.2
1,281,242 - +0.1
1,281,242 - +0.5
1,281,242 - -0.2
1,281,275 + -0.4
1,281,275 + -0.0
1,281,275 + -0.3
1,281,420 + +0.3
1,281,421 - +0.0
1,281,507 - -1.5
1,281,613 + -0.2
1,281,622 + ABIE51_RS06020 0.10 -0.3
1,281,622 + ABIE51_RS06020 0.10 -0.4
1,281,623 - ABIE51_RS06020 0.10 +0.4
1,281,623 - ABIE51_RS06020 0.10 -1.1
1,281,718 + ABIE51_RS06020 0.19 -0.1
1,281,718 + ABIE51_RS06020 0.19 +0.4
1,281,718 + ABIE51_RS06020 0.19 -0.5
1,281,718 + ABIE51_RS06020 0.19 -0.3
1,281,718 + ABIE51_RS06020 0.19 +0.0
1,281,719 - ABIE51_RS06020 0.19 -0.5
1,281,719 - ABIE51_RS06020 0.19 +0.1
1,281,719 - ABIE51_RS06020 0.19 -0.7
1,281,719 - ABIE51_RS06020 0.19 +0.1
1,281,719 - ABIE51_RS06020 0.19 +1.1
1,281,906 + ABIE51_RS06020 0.35 +1.3
1,281,906 + ABIE51_RS06020 0.35 -0.4
1,281,906 + ABIE51_RS06020 0.35 -0.3
1,281,907 - ABIE51_RS06020 0.35 +2.1
1,281,928 + ABIE51_RS06020 0.37 -0.1
1,281,928 + ABIE51_RS06020 0.37 -0.1
1,281,928 + ABIE51_RS06020 0.37 -1.6
1,281,929 - ABIE51_RS06020 0.37 -0.1
1,281,929 - ABIE51_RS06020 0.37 +0.1
1,281,929 - ABIE51_RS06020 0.37 -0.1
1,281,929 - ABIE51_RS06020 0.37 +0.2
1,282,073 - ABIE51_RS06020 0.50 -0.2
1,282,312 + ABIE51_RS06020 0.70 -0.0
1,282,312 + ABIE51_RS06020 0.70 -0.4
1,282,312 + ABIE51_RS06020 0.70 +0.2
1,282,312 + ABIE51_RS06020 0.70 -0.2
1,282,313 - ABIE51_RS06020 0.71 -0.5
1,282,313 - ABIE51_RS06020 0.71 +0.2
1,282,313 - ABIE51_RS06020 0.71 -0.4
1,282,313 - ABIE51_RS06020 0.71 +0.0
1,282,313 - ABIE51_RS06020 0.71 -0.1
1,282,462 + ABIE51_RS06020 0.84 +0.4
1,282,463 - ABIE51_RS06020 0.84 -0.1
1,282,463 - ABIE51_RS06020 0.84 +1.1
1,282,477 + ABIE51_RS06020 0.85 -1.0
1,282,477 + ABIE51_RS06020 0.85 +0.3
1,282,478 - ABIE51_RS06020 0.85 +0.1
1,282,603 + +0.2
1,282,603 + +0.7
1,282,604 - -0.2
1,282,604 - +0.3
1,282,627 + -0.9
1,282,628 - -0.0
1,282,740 - +0.4
1,282,760 + +1.0
1,282,760 + +0.3
1,282,761 - +0.2
1,282,761 - -0.6
1,282,778 + +0.8
1,282,779 - +0.5
1,282,793 + +0.2
1,282,794 - +0.1
1,282,895 + +0.2
1,282,895 + -0.6
1,282,904 + +0.2
1,282,904 + +0.1
1,282,905 - +0.3
1,282,985 + -0.2
1,282,985 + +0.4
1,282,986 - +0.1
1,282,988 + -0.0
1,282,988 + +0.6
1,283,084 + ABIE51_RS06025 0.14 +0.1
1,283,123 + ABIE51_RS06025 0.15 +2.1
1,283,124 - ABIE51_RS06025 0.15 -0.0
1,283,124 - ABIE51_RS06025 0.15 +0.0
1,283,124 - ABIE51_RS06025 0.15 -0.7
1,283,124 - ABIE51_RS06025 0.15 -0.1
1,283,141 + ABIE51_RS06025 0.16 +0.4
1,283,142 - ABIE51_RS06025 0.16 +0.1
1,283,142 - ABIE51_RS06025 0.16 +0.5
1,283,158 + ABIE51_RS06025 0.16 -0.2
1,283,249 + ABIE51_RS06025 0.20 +0.7
1,283,249 + ABIE51_RS06025 0.20 -0.7
1,283,249 + ABIE51_RS06025 0.20 +0.1
1,283,250 - ABIE51_RS06025 0.20 +0.0
1,283,250 - ABIE51_RS06025 0.20 +0.1
1,283,250 - ABIE51_RS06025 0.20 -0.3
1,283,363 + ABIE51_RS06025 0.24 -0.1
1,283,363 + ABIE51_RS06025 0.24 +0.1
1,283,364 - ABIE51_RS06025 0.24 +1.4
1,283,364 - ABIE51_RS06025 0.24 -0.2
1,283,364 - ABIE51_RS06025 0.24 +0.4
1,283,364 - ABIE51_RS06025 0.24 -0.2
1,283,417 + ABIE51_RS06025 0.26 +0.5
1,283,417 + ABIE51_RS06025 0.26 +1.2
1,283,525 + ABIE51_RS06025 0.31 -0.1
1,283,526 - ABIE51_RS06025 0.31 -0.2

Or see this region's nucleotide sequence