Experiment: Parafilmed volatile R2A agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01820 and ABIE51_RS01825 are separated by 332 nucleotides ABIE51_RS01825 and ABIE51_RS01830 are separated by 39 nucleotides ABIE51_RS01830 and ABIE51_RS01835 are separated by 2 nucleotides
ABIE51_RS01820: ABIE51_RS01820 - PD40 domain-containing protein, at 404,862 to 405,791
_RS01820
ABIE51_RS01825: ABIE51_RS01825 - SDR family oxidoreductase, at 406,124 to 406,876
_RS01825
ABIE51_RS01830: ABIE51_RS01830 - GNAT family N-acetyltransferase, at 406,916 to 407,371
_RS01830
ABIE51_RS01835: ABIE51_RS01835 - porphobilinogen synthase, at 407,374 to 408,366
_RS01835
Position (kb) 406
407 Strain fitness (log2 ratio) -2
-1
0
1 at 405.210 kb on + strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.211 kb on - strand, within ABIE51_RS01820 at 405.255 kb on + strand, within ABIE51_RS01820 at 405.531 kb on + strand, within ABIE51_RS01820 at 405.532 kb on - strand, within ABIE51_RS01820 at 405.532 kb on - strand, within ABIE51_RS01820 at 405.600 kb on + strand, within ABIE51_RS01820 at 405.742 kb on - strand at 405.742 kb on - strand at 405.813 kb on - strand at 405.813 kb on - strand at 405.813 kb on - strand at 406.048 kb on + strand at 406.048 kb on + strand at 406.048 kb on + strand at 406.049 kb on - strand at 406.049 kb on - strand at 406.049 kb on - strand at 406.058 kb on + strand at 406.058 kb on + strand at 406.059 kb on - strand at 406.125 kb on + strand at 406.125 kb on + strand at 406.125 kb on + strand at 406.125 kb on + strand at 406.164 kb on + strand at 406.164 kb on + strand at 406.165 kb on - strand at 406.165 kb on - strand at 406.165 kb on - strand at 406.165 kb on - strand at 406.165 kb on - strand at 406.299 kb on + strand, within ABIE51_RS01825 at 406.300 kb on - strand, within ABIE51_RS01825 at 406.300 kb on - strand, within ABIE51_RS01825 at 406.300 kb on - strand, within ABIE51_RS01825 at 406.390 kb on + strand, within ABIE51_RS01825 at 406.402 kb on - strand, within ABIE51_RS01825 at 406.402 kb on - strand, within ABIE51_RS01825 at 406.410 kb on + strand, within ABIE51_RS01825 at 406.410 kb on + strand, within ABIE51_RS01825 at 406.410 kb on + strand, within ABIE51_RS01825 at 406.411 kb on - strand, within ABIE51_RS01825 at 406.411 kb on - strand, within ABIE51_RS01825 at 406.411 kb on - strand, within ABIE51_RS01825 at 406.411 kb on - strand, within ABIE51_RS01825 at 406.791 kb on + strand, within ABIE51_RS01825 at 406.792 kb on - strand, within ABIE51_RS01825 at 406.938 kb on + strand at 406.939 kb on - strand at 406.939 kb on - strand at 406.939 kb on - strand at 406.980 kb on + strand, within ABIE51_RS01830 at 406.980 kb on + strand, within ABIE51_RS01830 at 406.981 kb on - strand, within ABIE51_RS01830 at 406.981 kb on - strand, within ABIE51_RS01830 at 406.981 kb on - strand, within ABIE51_RS01830
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile R2A agar plate with no fungus remove 405,210 + ABIE51_RS01820 0.37 -0.1 405,211 - ABIE51_RS01820 0.38 +0.1 405,211 - ABIE51_RS01820 0.38 -0.3 405,211 - ABIE51_RS01820 0.38 +0.7 405,211 - ABIE51_RS01820 0.38 +0.3 405,255 + ABIE51_RS01820 0.42 +0.0 405,531 + ABIE51_RS01820 0.72 -1.1 405,532 - ABIE51_RS01820 0.72 +0.9 405,532 - ABIE51_RS01820 0.72 -0.1 405,600 + ABIE51_RS01820 0.79 +1.7 405,742 - +0.2 405,742 - -0.3 405,813 - -0.4 405,813 - -0.3 405,813 - -1.9 406,048 + +0.1 406,048 + -0.3 406,048 + +0.6 406,049 - -0.1 406,049 - +0.4 406,049 - -0.8 406,058 + +0.8 406,058 + -0.2 406,059 - -0.3 406,125 + -0.1 406,125 + -0.1 406,125 + +1.4 406,125 + +0.1 406,164 + +0.3 406,164 + +0.1 406,165 - +0.6 406,165 - -0.3 406,165 - -0.2 406,165 - -0.1 406,165 - +1.0 406,299 + ABIE51_RS01825 0.23 +0.0 406,300 - ABIE51_RS01825 0.23 +1.4 406,300 - ABIE51_RS01825 0.23 -0.1 406,300 - ABIE51_RS01825 0.23 +0.3 406,390 + ABIE51_RS01825 0.35 -1.0 406,402 - ABIE51_RS01825 0.37 +0.0 406,402 - ABIE51_RS01825 0.37 +0.6 406,410 + ABIE51_RS01825 0.38 -0.5 406,410 + ABIE51_RS01825 0.38 -0.5 406,410 + ABIE51_RS01825 0.38 -0.6 406,411 - ABIE51_RS01825 0.38 -0.5 406,411 - ABIE51_RS01825 0.38 -0.0 406,411 - ABIE51_RS01825 0.38 -0.4 406,411 - ABIE51_RS01825 0.38 +0.0 406,791 + ABIE51_RS01825 0.89 +0.1 406,792 - ABIE51_RS01825 0.89 -0.9 406,938 + -1.0 406,939 - +0.6 406,939 - +0.0 406,939 - +0.5 406,980 + ABIE51_RS01830 0.14 -0.1 406,980 + ABIE51_RS01830 0.14 +0.2 406,981 - ABIE51_RS01830 0.14 -0.3 406,981 - ABIE51_RS01830 0.14 -0.6 406,981 - ABIE51_RS01830 0.14 -0.4
Or see this region's nucleotide sequence