Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS07610

Experiment: Parafilmed volatile R2A agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS07600 and ABIE51_RS07605 are separated by 190 nucleotidesABIE51_RS07605 and ABIE51_RS07610 are separated by 137 nucleotidesABIE51_RS07610 and ABIE51_RS07615 are separated by 239 nucleotides ABIE51_RS07600: ABIE51_RS07600 - copper chaperone PCu(A)C, at 1,606,342 to 1,606,743 _RS07600 ABIE51_RS07605: ABIE51_RS07605 - thioesterase family protein, at 1,606,934 to 1,607,320 _RS07605 ABIE51_RS07610: ABIE51_RS07610 - excinuclease ABC subunit UvrA, at 1,607,458 to 1,610,449 _RS07610 ABIE51_RS07615: ABIE51_RS07615 - hypothetical protein, at 1,610,689 to 1,611,537 _RS07615 Position (kb) 1607 1608 1609 1610 1611Strain fitness (log2 ratio) -2 -1 0 1 2at 1606.841 kb on + strandat 1606.841 kb on + strandat 1606.841 kb on + strandat 1606.842 kb on - strandat 1606.842 kb on - strandat 1606.842 kb on - strandat 1607.025 kb on + strand, within ABIE51_RS07605at 1607.025 kb on + strand, within ABIE51_RS07605at 1607.025 kb on + strand, within ABIE51_RS07605at 1607.026 kb on - strand, within ABIE51_RS07605at 1607.026 kb on - strand, within ABIE51_RS07605at 1607.026 kb on - strand, within ABIE51_RS07605at 1607.146 kb on - strand, within ABIE51_RS07605at 1607.146 kb on - strand, within ABIE51_RS07605at 1607.251 kb on - strand, within ABIE51_RS07605at 1607.332 kb on + strandat 1607.333 kb on - strandat 1607.673 kb on + strandat 1607.870 kb on + strand, within ABIE51_RS07610at 1607.870 kb on + strand, within ABIE51_RS07610at 1607.870 kb on + strand, within ABIE51_RS07610at 1607.870 kb on + strand, within ABIE51_RS07610at 1607.871 kb on - strand, within ABIE51_RS07610at 1607.871 kb on - strand, within ABIE51_RS07610at 1607.871 kb on - strand, within ABIE51_RS07610at 1607.871 kb on - strand, within ABIE51_RS07610at 1607.871 kb on - strand, within ABIE51_RS07610at 1607.871 kb on - strand, within ABIE51_RS07610at 1607.871 kb on - strand, within ABIE51_RS07610at 1607.871 kb on - strand, within ABIE51_RS07610at 1607.871 kb on - strand, within ABIE51_RS07610at 1607.871 kb on - strand, within ABIE51_RS07610at 1607.917 kb on + strand, within ABIE51_RS07610at 1607.917 kb on + strand, within ABIE51_RS07610at 1607.918 kb on - strand, within ABIE51_RS07610at 1607.972 kb on + strand, within ABIE51_RS07610at 1607.972 kb on + strand, within ABIE51_RS07610at 1607.972 kb on + strand, within ABIE51_RS07610at 1608.083 kb on + strand, within ABIE51_RS07610at 1608.083 kb on + strand, within ABIE51_RS07610at 1608.083 kb on + strand, within ABIE51_RS07610at 1608.084 kb on - strand, within ABIE51_RS07610at 1608.092 kb on + strand, within ABIE51_RS07610at 1608.093 kb on - strand, within ABIE51_RS07610at 1608.093 kb on - strand, within ABIE51_RS07610at 1608.093 kb on - strand, within ABIE51_RS07610at 1608.119 kb on + strand, within ABIE51_RS07610at 1608.152 kb on + strand, within ABIE51_RS07610at 1608.153 kb on - strand, within ABIE51_RS07610at 1608.153 kb on - strand, within ABIE51_RS07610at 1608.287 kb on + strand, within ABIE51_RS07610at 1608.288 kb on - strand, within ABIE51_RS07610at 1608.320 kb on + strand, within ABIE51_RS07610at 1608.320 kb on + strand, within ABIE51_RS07610at 1608.320 kb on + strand, within ABIE51_RS07610at 1608.320 kb on + strand, within ABIE51_RS07610at 1608.320 kb on + strand, within ABIE51_RS07610at 1608.320 kb on + strand, within ABIE51_RS07610at 1608.320 kb on + strand, within ABIE51_RS07610at 1608.321 kb on - strand, within ABIE51_RS07610at 1608.414 kb on - strand, within ABIE51_RS07610at 1608.656 kb on + strand, within ABIE51_RS07610at 1608.656 kb on + strand, within ABIE51_RS07610at 1608.761 kb on + strand, within ABIE51_RS07610at 1608.762 kb on - strand, within ABIE51_RS07610at 1608.762 kb on - strand, within ABIE51_RS07610at 1608.899 kb on + strand, within ABIE51_RS07610at 1608.899 kb on + strand, within ABIE51_RS07610at 1608.899 kb on + strand, within ABIE51_RS07610at 1608.899 kb on + strand, within ABIE51_RS07610at 1608.899 kb on + strand, within ABIE51_RS07610at 1608.899 kb on + strand, within ABIE51_RS07610at 1608.900 kb on - strand, within ABIE51_RS07610at 1608.900 kb on - strand, within ABIE51_RS07610at 1608.900 kb on - strand, within ABIE51_RS07610at 1608.900 kb on - strand, within ABIE51_RS07610at 1608.998 kb on + strand, within ABIE51_RS07610at 1608.999 kb on - strand, within ABIE51_RS07610at 1609.229 kb on + strand, within ABIE51_RS07610at 1609.229 kb on + strand, within ABIE51_RS07610at 1609.229 kb on + strand, within ABIE51_RS07610at 1609.229 kb on + strand, within ABIE51_RS07610at 1609.229 kb on + strand, within ABIE51_RS07610at 1609.230 kb on - strand, within ABIE51_RS07610at 1609.230 kb on - strand, within ABIE51_RS07610at 1609.230 kb on - strand, within ABIE51_RS07610at 1609.349 kb on + strand, within ABIE51_RS07610at 1609.350 kb on - strand, within ABIE51_RS07610at 1609.350 kb on - strand, within ABIE51_RS07610at 1609.350 kb on - strand, within ABIE51_RS07610at 1609.445 kb on + strand, within ABIE51_RS07610at 1609.445 kb on + strand, within ABIE51_RS07610at 1609.445 kb on + strand, within ABIE51_RS07610at 1609.446 kb on - strand, within ABIE51_RS07610at 1609.446 kb on - strand, within ABIE51_RS07610at 1609.446 kb on - strand, within ABIE51_RS07610at 1609.478 kb on + strand, within ABIE51_RS07610at 1609.479 kb on - strand, within ABIE51_RS07610at 1609.479 kb on - strand, within ABIE51_RS07610at 1609.479 kb on - strand, within ABIE51_RS07610at 1609.479 kb on - strand, within ABIE51_RS07610at 1609.481 kb on + strand, within ABIE51_RS07610at 1609.482 kb on - strand, within ABIE51_RS07610at 1609.482 kb on - strand, within ABIE51_RS07610at 1609.656 kb on + strand, within ABIE51_RS07610at 1609.656 kb on + strand, within ABIE51_RS07610at 1609.677 kb on + strand, within ABIE51_RS07610at 1609.678 kb on - strand, within ABIE51_RS07610at 1609.678 kb on - strand, within ABIE51_RS07610at 1609.678 kb on - strand, within ABIE51_RS07610at 1609.986 kb on + strand, within ABIE51_RS07610at 1609.986 kb on + strand, within ABIE51_RS07610at 1609.986 kb on + strand, within ABIE51_RS07610at 1609.986 kb on + strand, within ABIE51_RS07610at 1609.986 kb on + strand, within ABIE51_RS07610at 1609.986 kb on + strand, within ABIE51_RS07610at 1609.986 kb on + strand, within ABIE51_RS07610at 1609.986 kb on + strand, within ABIE51_RS07610at 1609.987 kb on - strand, within ABIE51_RS07610at 1609.987 kb on - strand, within ABIE51_RS07610at 1609.987 kb on - strand, within ABIE51_RS07610at 1609.987 kb on - strand, within ABIE51_RS07610at 1609.987 kb on - strand, within ABIE51_RS07610at 1610.109 kb on + strand, within ABIE51_RS07610at 1610.109 kb on + strand, within ABIE51_RS07610at 1610.109 kb on + strand, within ABIE51_RS07610at 1610.110 kb on - strand, within ABIE51_RS07610at 1610.110 kb on - strand, within ABIE51_RS07610at 1610.124 kb on + strand, within ABIE51_RS07610at 1610.124 kb on + strand, within ABIE51_RS07610at 1610.125 kb on - strand, within ABIE51_RS07610at 1610.130 kb on + strand, within ABIE51_RS07610at 1610.130 kb on + strand, within ABIE51_RS07610at 1610.130 kb on + strand, within ABIE51_RS07610at 1610.130 kb on + strand, within ABIE51_RS07610at 1610.130 kb on + strand, within ABIE51_RS07610at 1610.130 kb on + strand, within ABIE51_RS07610at 1610.131 kb on - strand, within ABIE51_RS07610at 1610.131 kb on - strand, within ABIE51_RS07610at 1610.131 kb on - strand, within ABIE51_RS07610at 1610.131 kb on - strand, within ABIE51_RS07610at 1610.131 kb on - strand, within ABIE51_RS07610at 1610.131 kb on - strand, within ABIE51_RS07610at 1610.131 kb on - strand, within ABIE51_RS07610at 1610.131 kb on - strand, within ABIE51_RS07610at 1610.131 kb on - strand, within ABIE51_RS07610at 1610.266 kb on - strandat 1610.266 kb on - strandat 1610.286 kb on + strandat 1610.286 kb on + strandat 1610.286 kb on + strandat 1610.307 kb on + strandat 1610.307 kb on + strandat 1610.308 kb on - strandat 1610.308 kb on - strandat 1610.436 kb on + strandat 1610.436 kb on + strandat 1610.436 kb on + strandat 1610.437 kb on - strandat 1610.437 kb on - strandat 1610.437 kb on - strandat 1610.437 kb on - strandat 1610.437 kb on - strandat 1610.691 kb on - strandat 1611.023 kb on - strand, within ABIE51_RS07615at 1611.080 kb on + strand, within ABIE51_RS07615at 1611.081 kb on - strand, within ABIE51_RS07615at 1611.081 kb on - strand, within ABIE51_RS07615at 1611.081 kb on - strand, within ABIE51_RS07615at 1611.086 kb on + strand, within ABIE51_RS07615at 1611.096 kb on - strand, within ABIE51_RS07615at 1611.290 kb on + strand, within ABIE51_RS07615at 1611.290 kb on + strand, within ABIE51_RS07615

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile R2A agar plate with no fungus
remove
1,606,841 + -0.2
1,606,841 + -0.7
1,606,841 + -0.1
1,606,842 - -0.2
1,606,842 - -0.4
1,606,842 - -0.2
1,607,025 + ABIE51_RS07605 0.24 +0.1
1,607,025 + ABIE51_RS07605 0.24 +0.4
1,607,025 + ABIE51_RS07605 0.24 -0.1
1,607,026 - ABIE51_RS07605 0.24 -0.3
1,607,026 - ABIE51_RS07605 0.24 -0.7
1,607,026 - ABIE51_RS07605 0.24 -0.3
1,607,146 - ABIE51_RS07605 0.55 +0.4
1,607,146 - ABIE51_RS07605 0.55 -0.5
1,607,251 - ABIE51_RS07605 0.82 -0.3
1,607,332 + +0.6
1,607,333 - -0.5
1,607,673 + +0.4
1,607,870 + ABIE51_RS07610 0.14 -0.2
1,607,870 + ABIE51_RS07610 0.14 -0.1
1,607,870 + ABIE51_RS07610 0.14 +1.4
1,607,870 + ABIE51_RS07610 0.14 +0.7
1,607,871 - ABIE51_RS07610 0.14 +1.4
1,607,871 - ABIE51_RS07610 0.14 +0.1
1,607,871 - ABIE51_RS07610 0.14 +0.1
1,607,871 - ABIE51_RS07610 0.14 +0.0
1,607,871 - ABIE51_RS07610 0.14 -0.0
1,607,871 - ABIE51_RS07610 0.14 -0.4
1,607,871 - ABIE51_RS07610 0.14 +0.1
1,607,871 - ABIE51_RS07610 0.14 +0.2
1,607,871 - ABIE51_RS07610 0.14 +0.5
1,607,871 - ABIE51_RS07610 0.14 +1.3
1,607,917 + ABIE51_RS07610 0.15 +0.1
1,607,917 + ABIE51_RS07610 0.15 +0.4
1,607,918 - ABIE51_RS07610 0.15 +0.1
1,607,972 + ABIE51_RS07610 0.17 +0.4
1,607,972 + ABIE51_RS07610 0.17 +0.4
1,607,972 + ABIE51_RS07610 0.17 +1.9
1,608,083 + ABIE51_RS07610 0.21 -0.1
1,608,083 + ABIE51_RS07610 0.21 +0.1
1,608,083 + ABIE51_RS07610 0.21 -0.2
1,608,084 - ABIE51_RS07610 0.21 -0.3
1,608,092 + ABIE51_RS07610 0.21 -0.8
1,608,093 - ABIE51_RS07610 0.21 -0.0
1,608,093 - ABIE51_RS07610 0.21 -0.2
1,608,093 - ABIE51_RS07610 0.21 +0.3
1,608,119 + ABIE51_RS07610 0.22 +0.4
1,608,152 + ABIE51_RS07610 0.23 -0.1
1,608,153 - ABIE51_RS07610 0.23 +1.0
1,608,153 - ABIE51_RS07610 0.23 +1.0
1,608,287 + ABIE51_RS07610 0.28 -0.4
1,608,288 - ABIE51_RS07610 0.28 +0.4
1,608,320 + ABIE51_RS07610 0.29 -0.4
1,608,320 + ABIE51_RS07610 0.29 +0.4
1,608,320 + ABIE51_RS07610 0.29 -0.6
1,608,320 + ABIE51_RS07610 0.29 +0.4
1,608,320 + ABIE51_RS07610 0.29 -0.4
1,608,320 + ABIE51_RS07610 0.29 +0.2
1,608,320 + ABIE51_RS07610 0.29 +0.3
1,608,321 - ABIE51_RS07610 0.29 +0.6
1,608,414 - ABIE51_RS07610 0.32 +0.8
1,608,656 + ABIE51_RS07610 0.40 -0.3
1,608,656 + ABIE51_RS07610 0.40 +1.0
1,608,761 + ABIE51_RS07610 0.44 -1.8
1,608,762 - ABIE51_RS07610 0.44 +0.1
1,608,762 - ABIE51_RS07610 0.44 +0.1
1,608,899 + ABIE51_RS07610 0.48 -0.9
1,608,899 + ABIE51_RS07610 0.48 +0.0
1,608,899 + ABIE51_RS07610 0.48 -0.4
1,608,899 + ABIE51_RS07610 0.48 -0.5
1,608,899 + ABIE51_RS07610 0.48 +0.4
1,608,899 + ABIE51_RS07610 0.48 +1.6
1,608,900 - ABIE51_RS07610 0.48 -0.4
1,608,900 - ABIE51_RS07610 0.48 -0.0
1,608,900 - ABIE51_RS07610 0.48 -0.3
1,608,900 - ABIE51_RS07610 0.48 +1.3
1,608,998 + ABIE51_RS07610 0.51 +1.5
1,608,999 - ABIE51_RS07610 0.52 +0.1
1,609,229 + ABIE51_RS07610 0.59 -0.4
1,609,229 + ABIE51_RS07610 0.59 -0.2
1,609,229 + ABIE51_RS07610 0.59 -0.1
1,609,229 + ABIE51_RS07610 0.59 +0.3
1,609,229 + ABIE51_RS07610 0.59 +0.4
1,609,230 - ABIE51_RS07610 0.59 -0.9
1,609,230 - ABIE51_RS07610 0.59 -1.7
1,609,230 - ABIE51_RS07610 0.59 -0.3
1,609,349 + ABIE51_RS07610 0.63 -0.6
1,609,350 - ABIE51_RS07610 0.63 +0.5
1,609,350 - ABIE51_RS07610 0.63 -0.7
1,609,350 - ABIE51_RS07610 0.63 -0.2
1,609,445 + ABIE51_RS07610 0.66 -0.2
1,609,445 + ABIE51_RS07610 0.66 -0.2
1,609,445 + ABIE51_RS07610 0.66 -0.1
1,609,446 - ABIE51_RS07610 0.66 -0.4
1,609,446 - ABIE51_RS07610 0.66 -0.2
1,609,446 - ABIE51_RS07610 0.66 -0.1
1,609,478 + ABIE51_RS07610 0.68 +0.8
1,609,479 - ABIE51_RS07610 0.68 +0.8
1,609,479 - ABIE51_RS07610 0.68 +0.2
1,609,479 - ABIE51_RS07610 0.68 +0.5
1,609,479 - ABIE51_RS07610 0.68 -0.1
1,609,481 + ABIE51_RS07610 0.68 -0.6
1,609,482 - ABIE51_RS07610 0.68 -1.3
1,609,482 - ABIE51_RS07610 0.68 +1.9
1,609,656 + ABIE51_RS07610 0.73 +0.8
1,609,656 + ABIE51_RS07610 0.73 -0.8
1,609,677 + ABIE51_RS07610 0.74 +0.2
1,609,678 - ABIE51_RS07610 0.74 -0.0
1,609,678 - ABIE51_RS07610 0.74 +0.7
1,609,678 - ABIE51_RS07610 0.74 -0.1
1,609,986 + ABIE51_RS07610 0.84 +0.4
1,609,986 + ABIE51_RS07610 0.84 +0.3
1,609,986 + ABIE51_RS07610 0.84 +0.2
1,609,986 + ABIE51_RS07610 0.84 +0.2
1,609,986 + ABIE51_RS07610 0.84 -0.1
1,609,986 + ABIE51_RS07610 0.84 -0.3
1,609,986 + ABIE51_RS07610 0.84 +0.3
1,609,986 + ABIE51_RS07610 0.84 +0.3
1,609,987 - ABIE51_RS07610 0.85 -0.6
1,609,987 - ABIE51_RS07610 0.85 -0.5
1,609,987 - ABIE51_RS07610 0.85 +0.3
1,609,987 - ABIE51_RS07610 0.85 -0.1
1,609,987 - ABIE51_RS07610 0.85 -0.4
1,610,109 + ABIE51_RS07610 0.89 +0.3
1,610,109 + ABIE51_RS07610 0.89 -0.2
1,610,109 + ABIE51_RS07610 0.89 +0.2
1,610,110 - ABIE51_RS07610 0.89 -0.4
1,610,110 - ABIE51_RS07610 0.89 -0.4
1,610,124 + ABIE51_RS07610 0.89 -0.3
1,610,124 + ABIE51_RS07610 0.89 +1.3
1,610,125 - ABIE51_RS07610 0.89 -0.5
1,610,130 + ABIE51_RS07610 0.89 -0.3
1,610,130 + ABIE51_RS07610 0.89 -0.4
1,610,130 + ABIE51_RS07610 0.89 +0.1
1,610,130 + ABIE51_RS07610 0.89 +0.3
1,610,130 + ABIE51_RS07610 0.89 +1.0
1,610,130 + ABIE51_RS07610 0.89 -0.0
1,610,131 - ABIE51_RS07610 0.89 +1.8
1,610,131 - ABIE51_RS07610 0.89 -0.6
1,610,131 - ABIE51_RS07610 0.89 -0.1
1,610,131 - ABIE51_RS07610 0.89 +1.5
1,610,131 - ABIE51_RS07610 0.89 -0.1
1,610,131 - ABIE51_RS07610 0.89 +0.1
1,610,131 - ABIE51_RS07610 0.89 -0.1
1,610,131 - ABIE51_RS07610 0.89 +0.5
1,610,131 - ABIE51_RS07610 0.89 -0.7
1,610,266 - -0.4
1,610,266 - +1.1
1,610,286 + -1.1
1,610,286 + +1.0
1,610,286 + -2.3
1,610,307 + -0.6
1,610,307 + +0.2
1,610,308 - +1.1
1,610,308 - -0.3
1,610,436 + -0.9
1,610,436 + +0.2
1,610,436 + +0.2
1,610,437 - +0.8
1,610,437 - -0.7
1,610,437 - +0.0
1,610,437 - -0.4
1,610,437 - +0.9
1,610,691 - +0.5
1,611,023 - ABIE51_RS07615 0.39 +0.7
1,611,080 + ABIE51_RS07615 0.46 +0.4
1,611,081 - ABIE51_RS07615 0.46 -0.1
1,611,081 - ABIE51_RS07615 0.46 +0.4
1,611,081 - ABIE51_RS07615 0.46 +0.6
1,611,086 + ABIE51_RS07615 0.47 -0.8
1,611,096 - ABIE51_RS07615 0.48 -0.5
1,611,290 + ABIE51_RS07615 0.71 -0.6
1,611,290 + ABIE51_RS07615 0.71 -0.6

Or see this region's nucleotide sequence