Experiment: Parafilmed volatile R2A agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS05635 and ABIE51_RS05640 are separated by 184 nucleotides ABIE51_RS05640 and ABIE51_RS05645 overlap by 4 nucleotides ABIE51_RS05645 and ABIE51_RS05650 are separated by 96 nucleotides
ABIE51_RS05635: ABIE51_RS05635 - YihY family inner membrane protein, at 1,212,254 to 1,213,519
_RS05635
ABIE51_RS05640: ABIE51_RS05640 - TlpA disulfide reductase family protein, at 1,213,704 to 1,214,129
_RS05640
ABIE51_RS05645: ABIE51_RS05645 - acylphosphatase, at 1,214,126 to 1,214,395
_RS05645
ABIE51_RS05650: ABIE51_RS05650 - autotransporter outer membrane beta-barrel domain-containing protein, at 1,214,492 to 1,218,016
_RS05650
Position (kb) 1214
1215 Strain fitness (log2 ratio) -1
0
1 at 1213.143 kb on - strand, within ABIE51_RS05635 at 1213.358 kb on + strand, within ABIE51_RS05635 at 1213.359 kb on - strand, within ABIE51_RS05635 at 1213.746 kb on + strand at 1213.747 kb on - strand, within ABIE51_RS05640 at 1213.747 kb on - strand, within ABIE51_RS05640 at 1213.747 kb on - strand, within ABIE51_RS05640 at 1213.885 kb on - strand, within ABIE51_RS05640 at 1214.013 kb on + strand, within ABIE51_RS05640 at 1214.013 kb on + strand, within ABIE51_RS05640 at 1214.014 kb on - strand, within ABIE51_RS05640 at 1214.014 kb on - strand, within ABIE51_RS05640 at 1214.014 kb on - strand, within ABIE51_RS05640 at 1214.014 kb on - strand, within ABIE51_RS05640 at 1214.505 kb on - strand at 1215.021 kb on - strand, within ABIE51_RS05650 at 1215.112 kb on + strand, within ABIE51_RS05650 at 1215.218 kb on + strand, within ABIE51_RS05650 at 1215.219 kb on - strand, within ABIE51_RS05650 at 1215.219 kb on - strand, within ABIE51_RS05650 at 1215.219 kb on - strand, within ABIE51_RS05650 at 1215.219 kb on - strand, within ABIE51_RS05650 at 1215.272 kb on + strand, within ABIE51_RS05650
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile R2A agar plate with no fungus remove 1,213,143 - ABIE51_RS05635 0.70 -0.8 1,213,358 + ABIE51_RS05635 0.87 +0.2 1,213,359 - ABIE51_RS05635 0.87 +0.4 1,213,746 + +0.0 1,213,747 - ABIE51_RS05640 0.10 -0.6 1,213,747 - ABIE51_RS05640 0.10 +0.3 1,213,747 - ABIE51_RS05640 0.10 -0.4 1,213,885 - ABIE51_RS05640 0.42 +0.2 1,214,013 + ABIE51_RS05640 0.73 -0.4 1,214,013 + ABIE51_RS05640 0.73 -0.1 1,214,014 - ABIE51_RS05640 0.73 -0.4 1,214,014 - ABIE51_RS05640 0.73 +1.3 1,214,014 - ABIE51_RS05640 0.73 +1.1 1,214,014 - ABIE51_RS05640 0.73 +0.5 1,214,505 - +0.7 1,215,021 - ABIE51_RS05650 0.15 +0.4 1,215,112 + ABIE51_RS05650 0.18 -0.2 1,215,218 + ABIE51_RS05650 0.21 +0.4 1,215,219 - ABIE51_RS05650 0.21 -0.2 1,215,219 - ABIE51_RS05650 0.21 +0.9 1,215,219 - ABIE51_RS05650 0.21 +0.1 1,215,219 - ABIE51_RS05650 0.21 -0.1 1,215,272 + ABIE51_RS05650 0.22 +0.1
Or see this region's nucleotide sequence