Experiment: Parafilmed volatile R2A agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00620 and ABIE51_RS00625 overlap by 4 nucleotides ABIE51_RS00625 and ABIE51_RS00630 overlap by 4 nucleotides ABIE51_RS00630 and ABIE51_RS00635 are separated by 232 nucleotides
ABIE51_RS00620: ABIE51_RS00620 - nicotinate phosphoribosyltransferase, at 128,386 to 129,810
_RS00620
ABIE51_RS00625: ABIE51_RS00625 - DMT family transporter, at 129,807 to 130,799
_RS00625
ABIE51_RS00630: ABIE51_RS00630 - aldo/keto reductase, at 130,796 to 131,749
_RS00630
ABIE51_RS00635: ABIE51_RS00635 - hybrid sensor histidine kinase/response regulator, at 131,982 to 133,091
_RS00635
Position (kb) 130
131
132 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 130.111 kb on + strand, within ABIE51_RS00625 at 130.162 kb on + strand, within ABIE51_RS00625 at 130.163 kb on - strand, within ABIE51_RS00625 at 130.201 kb on + strand, within ABIE51_RS00625 at 130.201 kb on + strand, within ABIE51_RS00625 at 130.201 kb on + strand, within ABIE51_RS00625 at 130.201 kb on + strand, within ABIE51_RS00625 at 130.201 kb on + strand, within ABIE51_RS00625 at 130.202 kb on - strand, within ABIE51_RS00625 at 130.233 kb on + strand, within ABIE51_RS00625 at 130.233 kb on + strand, within ABIE51_RS00625 at 130.233 kb on + strand, within ABIE51_RS00625 at 130.233 kb on + strand, within ABIE51_RS00625 at 130.258 kb on + strand, within ABIE51_RS00625 at 130.258 kb on + strand, within ABIE51_RS00625 at 130.258 kb on + strand, within ABIE51_RS00625 at 130.259 kb on - strand, within ABIE51_RS00625 at 130.259 kb on - strand, within ABIE51_RS00625 at 130.259 kb on - strand, within ABIE51_RS00625 at 130.267 kb on + strand, within ABIE51_RS00625 at 130.267 kb on + strand, within ABIE51_RS00625 at 130.267 kb on + strand, within ABIE51_RS00625 at 130.267 kb on + strand, within ABIE51_RS00625 at 130.267 kb on + strand, within ABIE51_RS00625 at 130.267 kb on + strand, within ABIE51_RS00625 at 130.267 kb on + strand, within ABIE51_RS00625 at 130.268 kb on - strand, within ABIE51_RS00625 at 130.268 kb on - strand, within ABIE51_RS00625 at 130.268 kb on - strand, within ABIE51_RS00625 at 130.363 kb on + strand, within ABIE51_RS00625 at 130.363 kb on + strand, within ABIE51_RS00625 at 130.364 kb on - strand, within ABIE51_RS00625 at 130.364 kb on - strand, within ABIE51_RS00625 at 130.364 kb on - strand, within ABIE51_RS00625 at 130.486 kb on + strand, within ABIE51_RS00625 at 130.486 kb on + strand, within ABIE51_RS00625 at 130.486 kb on + strand, within ABIE51_RS00625 at 130.487 kb on - strand, within ABIE51_RS00625 at 130.487 kb on - strand, within ABIE51_RS00625 at 130.522 kb on + strand, within ABIE51_RS00625 at 130.522 kb on + strand, within ABIE51_RS00625 at 130.523 kb on - strand, within ABIE51_RS00625 at 130.523 kb on - strand, within ABIE51_RS00625 at 130.523 kb on - strand, within ABIE51_RS00625 at 130.523 kb on - strand, within ABIE51_RS00625 at 130.523 kb on - strand, within ABIE51_RS00625 at 130.523 kb on - strand, within ABIE51_RS00625 at 130.525 kb on + strand, within ABIE51_RS00625 at 130.525 kb on + strand, within ABIE51_RS00625 at 130.525 kb on + strand, within ABIE51_RS00625 at 130.525 kb on + strand, within ABIE51_RS00625 at 131.025 kb on + strand, within ABIE51_RS00630 at 131.025 kb on + strand, within ABIE51_RS00630 at 131.026 kb on - strand, within ABIE51_RS00630 at 131.026 kb on - strand, within ABIE51_RS00630 at 131.082 kb on + strand, within ABIE51_RS00630 at 131.082 kb on + strand, within ABIE51_RS00630 at 131.082 kb on + strand, within ABIE51_RS00630 at 131.083 kb on - strand, within ABIE51_RS00630 at 131.083 kb on - strand, within ABIE51_RS00630 at 131.115 kb on + strand, within ABIE51_RS00630 at 131.115 kb on + strand, within ABIE51_RS00630 at 131.115 kb on + strand, within ABIE51_RS00630 at 131.116 kb on - strand, within ABIE51_RS00630 at 131.118 kb on + strand, within ABIE51_RS00630 at 131.118 kb on + strand, within ABIE51_RS00630 at 131.118 kb on + strand, within ABIE51_RS00630 at 131.118 kb on + strand, within ABIE51_RS00630 at 131.119 kb on - strand, within ABIE51_RS00630 at 131.119 kb on - strand, within ABIE51_RS00630 at 131.187 kb on + strand, within ABIE51_RS00630 at 131.187 kb on + strand, within ABIE51_RS00630 at 131.187 kb on + strand, within ABIE51_RS00630 at 131.187 kb on + strand, within ABIE51_RS00630 at 131.188 kb on - strand, within ABIE51_RS00630 at 131.188 kb on - strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.196 kb on + strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.197 kb on - strand, within ABIE51_RS00630 at 131.277 kb on + strand, within ABIE51_RS00630 at 131.277 kb on + strand, within ABIE51_RS00630 at 131.278 kb on - strand, within ABIE51_RS00630 at 131.382 kb on + strand, within ABIE51_RS00630 at 131.382 kb on + strand, within ABIE51_RS00630 at 131.383 kb on - strand, within ABIE51_RS00630 at 131.383 kb on - strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.580 kb on + strand, within ABIE51_RS00630 at 131.581 kb on - strand, within ABIE51_RS00630 at 131.768 kb on + strand at 131.768 kb on + strand at 131.768 kb on + strand at 131.769 kb on - strand at 131.769 kb on - strand at 131.796 kb on - strand at 131.796 kb on - strand at 131.820 kb on - strand at 131.820 kb on - strand at 131.820 kb on - strand at 131.915 kb on + strand at 131.915 kb on + strand at 131.990 kb on - strand at 132.078 kb on + strand at 132.078 kb on + strand at 132.123 kb on + strand, within ABIE51_RS00635 at 132.123 kb on + strand, within ABIE51_RS00635 at 132.124 kb on - strand, within ABIE51_RS00635 at 132.129 kb on + strand, within ABIE51_RS00635 at 132.300 kb on + strand, within ABIE51_RS00635 at 132.300 kb on + strand, within ABIE51_RS00635 at 132.300 kb on + strand, within ABIE51_RS00635 at 132.300 kb on + strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.301 kb on - strand, within ABIE51_RS00635 at 132.558 kb on + strand, within ABIE51_RS00635 at 132.558 kb on + strand, within ABIE51_RS00635 at 132.558 kb on + strand, within ABIE51_RS00635 at 132.559 kb on - strand, within ABIE51_RS00635 at 132.570 kb on + strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.571 kb on - strand, within ABIE51_RS00635 at 132.664 kb on - strand, within ABIE51_RS00635
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile R2A agar plate with no fungus remove 130,111 + ABIE51_RS00625 0.31 -1.1 130,162 + ABIE51_RS00625 0.36 -0.7 130,163 - ABIE51_RS00625 0.36 -0.3 130,201 + ABIE51_RS00625 0.40 +1.1 130,201 + ABIE51_RS00625 0.40 +0.8 130,201 + ABIE51_RS00625 0.40 -0.4 130,201 + ABIE51_RS00625 0.40 -0.2 130,201 + ABIE51_RS00625 0.40 +0.1 130,202 - ABIE51_RS00625 0.40 +1.2 130,233 + ABIE51_RS00625 0.43 +0.2 130,233 + ABIE51_RS00625 0.43 +0.1 130,233 + ABIE51_RS00625 0.43 +0.3 130,233 + ABIE51_RS00625 0.43 +0.0 130,258 + ABIE51_RS00625 0.45 -0.6 130,258 + ABIE51_RS00625 0.45 -0.2 130,258 + ABIE51_RS00625 0.45 -0.4 130,259 - ABIE51_RS00625 0.46 +0.6 130,259 - ABIE51_RS00625 0.46 -0.1 130,259 - ABIE51_RS00625 0.46 +0.2 130,267 + ABIE51_RS00625 0.46 -0.2 130,267 + ABIE51_RS00625 0.46 -0.1 130,267 + ABIE51_RS00625 0.46 -2.4 130,267 + ABIE51_RS00625 0.46 -1.1 130,267 + ABIE51_RS00625 0.46 -0.1 130,267 + ABIE51_RS00625 0.46 -0.4 130,267 + ABIE51_RS00625 0.46 +1.4 130,268 - ABIE51_RS00625 0.46 +0.0 130,268 - ABIE51_RS00625 0.46 -0.1 130,268 - ABIE51_RS00625 0.46 +0.5 130,363 + ABIE51_RS00625 0.56 -0.8 130,363 + ABIE51_RS00625 0.56 +0.5 130,364 - ABIE51_RS00625 0.56 +0.7 130,364 - ABIE51_RS00625 0.56 -1.1 130,364 - ABIE51_RS00625 0.56 -0.0 130,486 + ABIE51_RS00625 0.68 -1.1 130,486 + ABIE51_RS00625 0.68 +0.4 130,486 + ABIE51_RS00625 0.68 +0.1 130,487 - ABIE51_RS00625 0.68 -0.1 130,487 - ABIE51_RS00625 0.68 -0.0 130,522 + ABIE51_RS00625 0.72 -0.5 130,522 + ABIE51_RS00625 0.72 +1.2 130,523 - ABIE51_RS00625 0.72 -0.5 130,523 - ABIE51_RS00625 0.72 +0.2 130,523 - ABIE51_RS00625 0.72 +0.2 130,523 - ABIE51_RS00625 0.72 +0.4 130,523 - ABIE51_RS00625 0.72 +0.2 130,523 - ABIE51_RS00625 0.72 -0.1 130,525 + ABIE51_RS00625 0.72 +0.3 130,525 + ABIE51_RS00625 0.72 +0.1 130,525 + ABIE51_RS00625 0.72 -0.1 130,525 + ABIE51_RS00625 0.72 -0.0 131,025 + ABIE51_RS00630 0.24 +0.6 131,025 + ABIE51_RS00630 0.24 -0.4 131,026 - ABIE51_RS00630 0.24 -0.5 131,026 - ABIE51_RS00630 0.24 +0.5 131,082 + ABIE51_RS00630 0.30 -0.3 131,082 + ABIE51_RS00630 0.30 +0.8 131,082 + ABIE51_RS00630 0.30 -0.1 131,083 - ABIE51_RS00630 0.30 -0.1 131,083 - ABIE51_RS00630 0.30 -0.1 131,115 + ABIE51_RS00630 0.33 -0.3 131,115 + ABIE51_RS00630 0.33 -1.2 131,115 + ABIE51_RS00630 0.33 +0.1 131,116 - ABIE51_RS00630 0.34 +0.0 131,118 + ABIE51_RS00630 0.34 -0.0 131,118 + ABIE51_RS00630 0.34 -0.5 131,118 + ABIE51_RS00630 0.34 -0.3 131,118 + ABIE51_RS00630 0.34 -0.3 131,119 - ABIE51_RS00630 0.34 +0.8 131,119 - ABIE51_RS00630 0.34 -0.3 131,187 + ABIE51_RS00630 0.41 -0.5 131,187 + ABIE51_RS00630 0.41 +0.6 131,187 + ABIE51_RS00630 0.41 -0.2 131,187 + ABIE51_RS00630 0.41 +0.2 131,188 - ABIE51_RS00630 0.41 -0.1 131,188 - ABIE51_RS00630 0.41 -0.4 131,196 + ABIE51_RS00630 0.42 +0.9 131,196 + ABIE51_RS00630 0.42 -0.9 131,196 + ABIE51_RS00630 0.42 +0.5 131,196 + ABIE51_RS00630 0.42 -0.5 131,196 + ABIE51_RS00630 0.42 -0.0 131,197 - ABIE51_RS00630 0.42 -0.1 131,197 - ABIE51_RS00630 0.42 -0.9 131,197 - ABIE51_RS00630 0.42 -0.1 131,197 - ABIE51_RS00630 0.42 -0.7 131,197 - ABIE51_RS00630 0.42 -1.9 131,277 + ABIE51_RS00630 0.50 -1.3 131,277 + ABIE51_RS00630 0.50 -0.7 131,278 - ABIE51_RS00630 0.51 +0.3 131,382 + ABIE51_RS00630 0.61 +0.0 131,382 + ABIE51_RS00630 0.61 +0.1 131,383 - ABIE51_RS00630 0.62 +0.5 131,383 - ABIE51_RS00630 0.62 -0.5 131,580 + ABIE51_RS00630 0.82 -0.2 131,580 + ABIE51_RS00630 0.82 -0.8 131,580 + ABIE51_RS00630 0.82 -0.4 131,580 + ABIE51_RS00630 0.82 -0.7 131,580 + ABIE51_RS00630 0.82 -0.4 131,581 - ABIE51_RS00630 0.82 -0.6 131,768 + -0.9 131,768 + -1.1 131,768 + -1.5 131,769 - +0.6 131,769 - +0.3 131,796 - -0.4 131,796 - -0.1 131,820 - -0.3 131,820 - -0.1 131,820 - -0.6 131,915 + -1.3 131,915 + -1.0 131,990 - +0.9 132,078 + +0.5 132,078 + -2.1 132,123 + ABIE51_RS00635 0.13 -2.5 132,123 + ABIE51_RS00635 0.13 -0.6 132,124 - ABIE51_RS00635 0.13 -0.6 132,129 + ABIE51_RS00635 0.13 -0.4 132,300 + ABIE51_RS00635 0.29 -2.4 132,300 + ABIE51_RS00635 0.29 -2.0 132,300 + ABIE51_RS00635 0.29 -1.6 132,300 + ABIE51_RS00635 0.29 -0.2 132,301 - ABIE51_RS00635 0.29 +0.9 132,301 - ABIE51_RS00635 0.29 -0.6 132,301 - ABIE51_RS00635 0.29 -1.4 132,301 - ABIE51_RS00635 0.29 -0.6 132,301 - ABIE51_RS00635 0.29 -2.2 132,301 - ABIE51_RS00635 0.29 -0.1 132,558 + ABIE51_RS00635 0.52 -1.6 132,558 + ABIE51_RS00635 0.52 +0.9 132,558 + ABIE51_RS00635 0.52 -1.2 132,559 - ABIE51_RS00635 0.52 -1.8 132,570 + ABIE51_RS00635 0.53 +1.9 132,571 - ABIE51_RS00635 0.53 -1.2 132,571 - ABIE51_RS00635 0.53 +1.9 132,571 - ABIE51_RS00635 0.53 +0.6 132,571 - ABIE51_RS00635 0.53 +0.1 132,571 - ABIE51_RS00635 0.53 -2.5 132,664 - ABIE51_RS00635 0.61 -3.8
Or see this region's nucleotide sequence