Experiment: Aerobic; Uranyl acetate 80
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS04365 and ABCV34_RS04370 are separated by 16 nucleotides ABCV34_RS04370 and ABCV34_RS04375 overlap by 4 nucleotides
ABCV34_RS04365: ABCV34_RS04365 - ATPase, T2SS/T4P/T4SS family, at 951,188 to 952,924
_RS04365
ABCV34_RS04370: ABCV34_RS04370 - pilus assembly protein N-terminal domain-containing protein, at 952,941 to 954,395
_RS04370
ABCV34_RS04375: ABCV34_RS04375 - Flp pilus assembly protein CpaB, at 954,392 to 955,438
_RS04375
Position (kb) 952
953
954
955 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 952.286 kb on + strand, within ABCV34_RS04365 at 952.286 kb on + strand, within ABCV34_RS04365 at 952.286 kb on + strand, within ABCV34_RS04365 at 952.287 kb on - strand, within ABCV34_RS04365 at 952.287 kb on - strand, within ABCV34_RS04365 at 952.698 kb on + strand, within ABCV34_RS04365 at 952.699 kb on - strand, within ABCV34_RS04365 at 952.699 kb on - strand, within ABCV34_RS04365 at 953.474 kb on + strand, within ABCV34_RS04370 at 953.475 kb on - strand, within ABCV34_RS04370 at 953.500 kb on + strand, within ABCV34_RS04370 at 953.500 kb on + strand, within ABCV34_RS04370 at 953.501 kb on - strand, within ABCV34_RS04370 at 953.501 kb on - strand, within ABCV34_RS04370 at 953.501 kb on - strand, within ABCV34_RS04370 at 953.638 kb on + strand, within ABCV34_RS04370 at 953.799 kb on + strand, within ABCV34_RS04370 at 954.046 kb on + strand, within ABCV34_RS04370 at 954.190 kb on - strand, within ABCV34_RS04370 at 954.282 kb on + strand at 954.368 kb on + strand at 954.368 kb on + strand at 954.368 kb on + strand at 954.369 kb on - strand at 954.369 kb on - strand at 954.383 kb on - strand at 954.666 kb on + strand, within ABCV34_RS04375 at 954.667 kb on - strand, within ABCV34_RS04375 at 954.667 kb on - strand, within ABCV34_RS04375 at 954.667 kb on - strand, within ABCV34_RS04375 at 954.864 kb on + strand, within ABCV34_RS04375 at 954.864 kb on + strand, within ABCV34_RS04375 at 954.864 kb on + strand, within ABCV34_RS04375 at 954.865 kb on - strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 955.151 kb on + strand, within ABCV34_RS04375 at 955.152 kb on - strand, within ABCV34_RS04375 at 955.152 kb on - strand, within ABCV34_RS04375 at 955.152 kb on - strand, within ABCV34_RS04375
Per-strain Table
Position Strand Gene LocusTag Fraction Aerobic; Uranyl acetate 80 remove 952,286 + ABCV34_RS04365 0.63 -1.4 952,286 + ABCV34_RS04365 0.63 -1.8 952,286 + ABCV34_RS04365 0.63 -2.0 952,287 - ABCV34_RS04365 0.63 -1.5 952,287 - ABCV34_RS04365 0.63 -2.1 952,698 + ABCV34_RS04365 0.87 -0.8 952,699 - ABCV34_RS04365 0.87 -2.0 952,699 - ABCV34_RS04365 0.87 -1.6 953,474 + ABCV34_RS04370 0.37 -1.4 953,475 - ABCV34_RS04370 0.37 -1.8 953,500 + ABCV34_RS04370 0.38 -1.6 953,500 + ABCV34_RS04370 0.38 -2.5 953,501 - ABCV34_RS04370 0.38 -1.6 953,501 - ABCV34_RS04370 0.38 +0.4 953,501 - ABCV34_RS04370 0.38 -1.9 953,638 + ABCV34_RS04370 0.48 -2.0 953,799 + ABCV34_RS04370 0.59 -0.9 954,046 + ABCV34_RS04370 0.76 -1.3 954,190 - ABCV34_RS04370 0.86 +0.7 954,282 + -0.5 954,368 + -0.8 954,368 + -3.1 954,368 + -1.5 954,369 - -1.4 954,369 - -0.3 954,383 - -0.8 954,666 + ABCV34_RS04375 0.26 -2.2 954,667 - ABCV34_RS04375 0.26 -2.5 954,667 - ABCV34_RS04375 0.26 -0.8 954,667 - ABCV34_RS04375 0.26 -1.2 954,864 + ABCV34_RS04375 0.45 -0.9 954,864 + ABCV34_RS04375 0.45 -2.0 954,864 + ABCV34_RS04375 0.45 -0.8 954,865 - ABCV34_RS04375 0.45 -2.3 954,981 + ABCV34_RS04375 0.56 -1.5 954,981 + ABCV34_RS04375 0.56 -1.5 954,981 + ABCV34_RS04375 0.56 -1.5 954,981 + ABCV34_RS04375 0.56 -1.2 954,981 + ABCV34_RS04375 0.56 -0.8 954,981 + ABCV34_RS04375 0.56 -1.5 954,981 + ABCV34_RS04375 0.56 -1.9 954,981 + ABCV34_RS04375 0.56 -1.3 954,981 + ABCV34_RS04375 0.56 -1.0 954,982 - ABCV34_RS04375 0.56 -2.1 954,982 - ABCV34_RS04375 0.56 -2.0 954,982 - ABCV34_RS04375 0.56 -3.2 954,982 - ABCV34_RS04375 0.56 -1.6 954,982 - ABCV34_RS04375 0.56 -2.1 954,982 - ABCV34_RS04375 0.56 -1.5 954,982 - ABCV34_RS04375 0.56 -1.7 954,982 - ABCV34_RS04375 0.56 -1.5 954,982 - ABCV34_RS04375 0.56 -1.5 954,982 - ABCV34_RS04375 0.56 -0.7 954,982 - ABCV34_RS04375 0.56 -1.4 954,982 - ABCV34_RS04375 0.56 -0.8 954,982 - ABCV34_RS04375 0.56 -2.0 954,982 - ABCV34_RS04375 0.56 -1.8 954,982 - ABCV34_RS04375 0.56 -1.5 954,982 - ABCV34_RS04375 0.56 -0.0 955,151 + ABCV34_RS04375 0.72 +0.4 955,152 - ABCV34_RS04375 0.73 -0.7 955,152 - ABCV34_RS04375 0.73 -1.6 955,152 - ABCV34_RS04375 0.73 -1.3
Or see this region's nucleotide sequence