Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS10595

Experiment: Aerobic; Aluminium sulfate 215

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS10590 and ABCV34_RS10595 are separated by 168 nucleotidesABCV34_RS10595 and ABCV34_RS10600 are separated by 12 nucleotidesABCV34_RS10600 and ABCV34_RS10605 are separated by 316 nucleotides ABCV34_RS10590: ABCV34_RS10590 - N-acetyl-gamma-glutamyl-phosphate reductase, at 2,258,249 to 2,259,307 _RS10590 ABCV34_RS10595: ABCV34_RS10595 - 30S ribosomal protein S9, at 2,259,476 to 2,259,868 _RS10595 ABCV34_RS10600: ABCV34_RS10600 - 50S ribosomal protein L13, at 2,259,881 to 2,260,309 _RS10600 ABCV34_RS10605: ABCV34_RS10605 - TRAP transporter substrate-binding protein, at 2,260,626 to 2,261,726 _RS10605 Position (kb) 2259 2260Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2259.376 kb on + strandat 2259.376 kb on + strandat 2259.377 kb on - strandat 2259.377 kb on - strandat 2260.468 kb on - strandat 2260.468 kb on - strandat 2260.545 kb on - strandat 2260.624 kb on + strandat 2260.625 kb on - strandat 2260.625 kb on - strandat 2260.660 kb on + strandat 2260.660 kb on + strandat 2260.660 kb on + strandat 2260.660 kb on + strandat 2260.660 kb on + strandat 2260.660 kb on + strandat 2260.660 kb on + strandat 2260.660 kb on + strandat 2260.661 kb on - strandat 2260.661 kb on - strandat 2260.661 kb on - strandat 2260.661 kb on - strandat 2260.661 kb on - strandat 2260.661 kb on - strandat 2260.661 kb on - strandat 2260.661 kb on - strandat 2260.661 kb on - strandat 2260.669 kb on + strandat 2260.669 kb on + strandat 2260.669 kb on + strandat 2260.670 kb on - strandat 2260.670 kb on - strandat 2260.670 kb on - strandat 2260.723 kb on + strandat 2260.723 kb on + strandat 2260.723 kb on + strandat 2260.723 kb on + strandat 2260.723 kb on + strandat 2260.724 kb on - strandat 2260.724 kb on - strandat 2260.724 kb on - strandat 2260.724 kb on - strandat 2260.773 kb on - strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.774 kb on + strand, within ABCV34_RS10605at 2260.775 kb on - strand, within ABCV34_RS10605at 2260.775 kb on - strand, within ABCV34_RS10605at 2260.775 kb on - strand, within ABCV34_RS10605at 2260.775 kb on - strand, within ABCV34_RS10605at 2260.775 kb on - strand, within ABCV34_RS10605at 2260.775 kb on - strand, within ABCV34_RS10605at 2260.775 kb on - strand, within ABCV34_RS10605at 2260.775 kb on - strand, within ABCV34_RS10605at 2260.775 kb on - strand, within ABCV34_RS10605at 2260.775 kb on - strand, within ABCV34_RS10605

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Per-strain Table

Position Strand Gene LocusTag Fraction Aerobic; Aluminium sulfate 215
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2,259,376 + -1.0
2,259,376 + -1.2
2,259,377 - -1.6
2,259,377 - -1.9
2,260,468 - -0.7
2,260,468 - -1.3
2,260,545 - -1.4
2,260,624 + -3.0
2,260,625 - -2.5
2,260,625 - -2.2
2,260,660 + -2.3
2,260,660 + -2.0
2,260,660 + -1.5
2,260,660 + -1.1
2,260,660 + -0.2
2,260,660 + -2.2
2,260,660 + -3.9
2,260,660 + -0.9
2,260,661 - -1.7
2,260,661 - -1.5
2,260,661 - -1.4
2,260,661 - -2.0
2,260,661 - -1.5
2,260,661 - -1.7
2,260,661 - -0.4
2,260,661 - -2.2
2,260,661 - -1.7
2,260,669 + -1.6
2,260,669 + -2.0
2,260,669 + -1.1
2,260,670 - -1.8
2,260,670 - -1.5
2,260,670 - -1.4
2,260,723 + -0.9
2,260,723 + -1.1
2,260,723 + -1.3
2,260,723 + -1.4
2,260,723 + -1.7
2,260,724 - -1.3
2,260,724 - -1.8
2,260,724 - -2.4
2,260,724 - -2.2
2,260,773 - ABCV34_RS10605 0.13 -1.6
2,260,774 + ABCV34_RS10605 0.13 -2.0
2,260,774 + ABCV34_RS10605 0.13 -1.3
2,260,774 + ABCV34_RS10605 0.13 -1.4
2,260,774 + ABCV34_RS10605 0.13 -1.8
2,260,774 + ABCV34_RS10605 0.13 -0.2
2,260,774 + ABCV34_RS10605 0.13 -0.9
2,260,774 + ABCV34_RS10605 0.13 -1.4
2,260,774 + ABCV34_RS10605 0.13 -0.6
2,260,774 + ABCV34_RS10605 0.13 -1.2
2,260,774 + ABCV34_RS10605 0.13 -1.3
2,260,774 + ABCV34_RS10605 0.13 -1.4
2,260,774 + ABCV34_RS10605 0.13 -0.4
2,260,774 + ABCV34_RS10605 0.13 -1.2
2,260,775 - ABCV34_RS10605 0.14 -1.5
2,260,775 - ABCV34_RS10605 0.14 -1.1
2,260,775 - ABCV34_RS10605 0.14 -2.2
2,260,775 - ABCV34_RS10605 0.14 -1.5
2,260,775 - ABCV34_RS10605 0.14 -0.2
2,260,775 - ABCV34_RS10605 0.14 -1.2
2,260,775 - ABCV34_RS10605 0.14 -2.2
2,260,775 - ABCV34_RS10605 0.14 -1.9
2,260,775 - ABCV34_RS10605 0.14 -2.3
2,260,775 - ABCV34_RS10605 0.14 -1.3

Or see this region's nucleotide sequence