Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS10585

Experiment: Aerobic; Aluminium sulfate 215

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABCV34_RS10575 and ABCV34_RS10580 are separated by 12 nucleotidesABCV34_RS10580 and ABCV34_RS10585 overlap by 14 nucleotidesABCV34_RS10585 and ABCV34_RS10590 are separated by 13 nucleotides ABCV34_RS10575: ABCV34_RS10575 - anhydro-N-acetylmuramic acid kinase, at 2,255,961 to 2,257,133 _RS10575 ABCV34_RS10580: ABCV34_RS10580 - iron-sulfur cluster insertion protein ErpA, at 2,257,146 to 2,257,511 _RS10580 ABCV34_RS10585: ABCV34_RS10585 - DUF6776 family protein, at 2,257,498 to 2,258,235 _RS10585 ABCV34_RS10590: ABCV34_RS10590 - N-acetyl-gamma-glutamyl-phosphate reductase, at 2,258,249 to 2,259,307 _RS10590 Position (kb) 2257 2258 2259Strain fitness (log2 ratio) -2 -1 0 1at 2256.639 kb on + strand, within ABCV34_RS10575at 2256.697 kb on + strand, within ABCV34_RS10575at 2256.994 kb on - strand, within ABCV34_RS10575at 2257.122 kb on + strandat 2257.234 kb on + strand, within ABCV34_RS10580at 2257.235 kb on - strand, within ABCV34_RS10580at 2257.259 kb on - strand, within ABCV34_RS10580at 2257.514 kb on + strandat 2257.515 kb on - strandat 2257.515 kb on - strandat 2257.515 kb on - strandat 2257.926 kb on - strand, within ABCV34_RS10585at 2257.926 kb on - strand, within ABCV34_RS10585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aerobic; Aluminium sulfate 215
remove
2,256,639 + ABCV34_RS10575 0.58 -1.2
2,256,697 + ABCV34_RS10575 0.63 -1.1
2,256,994 - ABCV34_RS10575 0.88 -1.1
2,257,122 + +0.2
2,257,234 + ABCV34_RS10580 0.24 -1.3
2,257,235 - ABCV34_RS10580 0.24 -1.3
2,257,259 - ABCV34_RS10580 0.31 -2.3
2,257,514 + +0.0
2,257,515 - -1.1
2,257,515 - -0.6
2,257,515 - +0.1
2,257,926 - ABCV34_RS10585 0.58 +0.1
2,257,926 - ABCV34_RS10585 0.58 -1.3

Or see this region's nucleotide sequence