Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS21290 and ECOLIN_RS21295 are separated by 114 nucleotides ECOLIN_RS21295 and ECOLIN_RS33285 are separated by 117 nucleotides ECOLIN_RS33285 and ECOLIN_RS21305 are separated by 20 nucleotides
ECOLIN_RS21290: ECOLIN_RS21290 - sugar-phosphatase, at 4,273,598 to 4,274,410
_RS21290
ECOLIN_RS21295: ECOLIN_RS21295 - YidB family protein, at 4,274,525 to 4,274,923
_RS21295
ECOLIN_RS33285: ECOLIN_RS33285 - hypothetical protein, at 4,275,041 to 4,275,142
_RS33285
ECOLIN_RS21305: ECOLIN_RS21305 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 4,275,163 to 4,277,577
_RS21305
Position (kb) 4275
4276 Strain fitness (log2 ratio) -1
0
1 at 4274.142 kb on + strand, within ECOLIN_RS21290 at 4274.209 kb on + strand, within ECOLIN_RS21290 at 4274.237 kb on - strand, within ECOLIN_RS21290 at 4274.579 kb on - strand, within ECOLIN_RS21295 at 4274.937 kb on - strand at 4274.945 kb on - strand at 4274.965 kb on + strand at 4274.966 kb on - strand at 4275.035 kb on + strand at 4275.035 kb on + strand at 4275.164 kb on + strand at 4275.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,274,142 + ECOLIN_RS21290 0.67 +0.3 4,274,209 + ECOLIN_RS21290 0.75 -0.1 4,274,237 - ECOLIN_RS21290 0.79 +0.6 4,274,579 - ECOLIN_RS21295 0.14 -0.1 4,274,937 - +0.2 4,274,945 - -0.1 4,274,965 + +0.1 4,274,966 - +0.3 4,275,035 + +0.0 4,275,035 + +0.2 4,275,164 + +0.2 4,275,165 - +0.2
Or see this region's nucleotide sequence