Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS24415 and ECOLIN_RS24420 are separated by 9 nucleotides ECOLIN_RS24420 and ECOLIN_RS24425 are separated by 9 nucleotides ECOLIN_RS24425 and ECOLIN_RS24430 are separated by 9 nucleotides
ECOLIN_RS24415: ECOLIN_RS24415 - acyl CoA:acetate/3-ketoacid CoA transferase, at 4,905,232 to 4,906,773
_RS24415
ECOLIN_RS24420: ECOLIN_RS24420 - enoyl-CoA hydratase/isomerase family protein, at 4,906,783 to 4,907,559
_RS24420
ECOLIN_RS24425: ECOLIN_RS24425 - sugar phosphate isomerase/epimerase family protein, at 4,907,569 to 4,908,411
_RS24425
ECOLIN_RS24430: ECOLIN_RS24430 - 3-ketoacyl-ACP reductase, at 4,908,421 to 4,909,212
_RS24430
Position (kb) 4906
4907
4908 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4906.029 kb on - strand, within ECOLIN_RS24415 at 4906.107 kb on + strand, within ECOLIN_RS24415 at 4906.107 kb on + strand, within ECOLIN_RS24415 at 4906.182 kb on - strand, within ECOLIN_RS24415 at 4906.260 kb on - strand, within ECOLIN_RS24415 at 4906.318 kb on + strand, within ECOLIN_RS24415 at 4906.613 kb on - strand, within ECOLIN_RS24415 at 4906.613 kb on - strand, within ECOLIN_RS24415 at 4906.767 kb on + strand at 4906.767 kb on + strand at 4906.768 kb on - strand at 4906.768 kb on - strand at 4906.774 kb on - strand at 4906.774 kb on - strand at 4906.900 kb on - strand, within ECOLIN_RS24420 at 4906.926 kb on + strand, within ECOLIN_RS24420 at 4906.929 kb on + strand, within ECOLIN_RS24420 at 4907.330 kb on - strand, within ECOLIN_RS24420 at 4907.413 kb on + strand, within ECOLIN_RS24420 at 4907.577 kb on - strand at 4907.617 kb on - strand at 4908.056 kb on + strand, within ECOLIN_RS24425 at 4908.056 kb on + strand, within ECOLIN_RS24425 at 4908.099 kb on + strand, within ECOLIN_RS24425 at 4908.192 kb on - strand, within ECOLIN_RS24425 at 4908.192 kb on - strand, within ECOLIN_RS24425 at 4908.194 kb on + strand, within ECOLIN_RS24425 at 4908.194 kb on + strand, within ECOLIN_RS24425 at 4908.223 kb on + strand, within ECOLIN_RS24425 at 4908.351 kb on + strand at 4908.352 kb on - strand at 4908.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,906,029 - ECOLIN_RS24415 0.52 +0.3 4,906,107 + ECOLIN_RS24415 0.57 +0.5 4,906,107 + ECOLIN_RS24415 0.57 -0.9 4,906,182 - ECOLIN_RS24415 0.62 -0.4 4,906,260 - ECOLIN_RS24415 0.67 -0.5 4,906,318 + ECOLIN_RS24415 0.70 +1.1 4,906,613 - ECOLIN_RS24415 0.90 -0.4 4,906,613 - ECOLIN_RS24415 0.90 +0.1 4,906,767 + -1.8 4,906,767 + -0.0 4,906,768 - +0.0 4,906,768 - -0.0 4,906,774 - +0.1 4,906,774 - +0.0 4,906,900 - ECOLIN_RS24420 0.15 +0.2 4,906,926 + ECOLIN_RS24420 0.18 +0.3 4,906,929 + ECOLIN_RS24420 0.19 +0.2 4,907,330 - ECOLIN_RS24420 0.70 -0.1 4,907,413 + ECOLIN_RS24420 0.81 +0.7 4,907,577 - +0.1 4,907,617 - -0.1 4,908,056 + ECOLIN_RS24425 0.58 -0.6 4,908,056 + ECOLIN_RS24425 0.58 +0.5 4,908,099 + ECOLIN_RS24425 0.63 -0.4 4,908,192 - ECOLIN_RS24425 0.74 +2.0 4,908,192 - ECOLIN_RS24425 0.74 +0.2 4,908,194 + ECOLIN_RS24425 0.74 -0.6 4,908,194 + ECOLIN_RS24425 0.74 +0.3 4,908,223 + ECOLIN_RS24425 0.78 -1.4 4,908,351 + -0.2 4,908,352 - +0.2 4,908,487 - -0.1
Or see this region's nucleotide sequence