Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS26990 and ECOLIN_RS26995 are separated by 103 nucleotides ECOLIN_RS26995 and ECOLIN_RS27000 are separated by 30 nucleotides ECOLIN_RS27000 and ECOLIN_RS27005 are separated by 9 nucleotides
ECOLIN_RS26990: ECOLIN_RS26990 - GRP family sugar transporter, at 5,401,409 to 5,402,413
_RS26990
ECOLIN_RS26995: ECOLIN_RS26995 - L-fuculose-phosphate aldolase, at 5,402,517 to 5,403,158
_RS26995
ECOLIN_RS27000: ECOLIN_RS27000 - S-methyl-5-thioribose-1-phosphate isomerase, at 5,403,189 to 5,404,304
_RS27000
ECOLIN_RS27005: ECOLIN_RS27005 - S-methyl-5-thioribose kinase, at 5,404,314 to 5,405,573
_RS27005
Position (kb) 5403
5404
5405 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5402.378 kb on + strand at 5402.430 kb on + strand at 5402.431 kb on - strand at 5402.533 kb on + strand at 5402.534 kb on - strand at 5402.619 kb on + strand, within ECOLIN_RS26995 at 5402.620 kb on - strand, within ECOLIN_RS26995 at 5402.620 kb on - strand, within ECOLIN_RS26995 at 5402.717 kb on + strand, within ECOLIN_RS26995 at 5402.718 kb on - strand, within ECOLIN_RS26995 at 5402.718 kb on - strand, within ECOLIN_RS26995 at 5402.771 kb on + strand, within ECOLIN_RS26995 at 5402.774 kb on - strand, within ECOLIN_RS26995 at 5402.776 kb on + strand, within ECOLIN_RS26995 at 5402.776 kb on + strand, within ECOLIN_RS26995 at 5402.819 kb on + strand, within ECOLIN_RS26995 at 5402.819 kb on + strand, within ECOLIN_RS26995 at 5402.820 kb on - strand, within ECOLIN_RS26995 at 5402.820 kb on - strand, within ECOLIN_RS26995 at 5402.821 kb on + strand, within ECOLIN_RS26995 at 5402.850 kb on + strand, within ECOLIN_RS26995 at 5402.886 kb on + strand, within ECOLIN_RS26995 at 5402.887 kb on - strand, within ECOLIN_RS26995 at 5403.170 kb on - strand at 5403.216 kb on - strand at 5403.255 kb on - strand at 5403.532 kb on + strand, within ECOLIN_RS27000 at 5403.532 kb on + strand, within ECOLIN_RS27000 at 5403.533 kb on - strand, within ECOLIN_RS27000 at 5403.533 kb on - strand, within ECOLIN_RS27000 at 5403.533 kb on - strand, within ECOLIN_RS27000 at 5403.761 kb on - strand, within ECOLIN_RS27000 at 5403.761 kb on - strand, within ECOLIN_RS27000 at 5403.812 kb on + strand, within ECOLIN_RS27000 at 5403.813 kb on - strand, within ECOLIN_RS27000 at 5403.881 kb on + strand, within ECOLIN_RS27000 at 5403.882 kb on - strand, within ECOLIN_RS27000 at 5403.889 kb on - strand, within ECOLIN_RS27000 at 5404.022 kb on + strand, within ECOLIN_RS27000 at 5404.023 kb on - strand, within ECOLIN_RS27000 at 5404.215 kb on - strand at 5404.290 kb on - strand at 5404.298 kb on + strand at 5404.320 kb on - strand at 5404.320 kb on - strand at 5404.376 kb on + strand at 5404.431 kb on - strand at 5404.735 kb on + strand, within ECOLIN_RS27005 at 5404.736 kb on - strand, within ECOLIN_RS27005 at 5404.759 kb on + strand, within ECOLIN_RS27005 at 5404.759 kb on + strand, within ECOLIN_RS27005 at 5404.759 kb on + strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.760 kb on - strand, within ECOLIN_RS27005 at 5404.898 kb on - strand, within ECOLIN_RS27005 at 5404.901 kb on + strand, within ECOLIN_RS27005 at 5404.901 kb on + strand, within ECOLIN_RS27005 at 5404.901 kb on + strand, within ECOLIN_RS27005 at 5404.902 kb on - strand, within ECOLIN_RS27005 at 5404.902 kb on - strand, within ECOLIN_RS27005 at 5404.902 kb on - strand, within ECOLIN_RS27005 at 5404.902 kb on - strand, within ECOLIN_RS27005 at 5404.929 kb on + strand, within ECOLIN_RS27005 at 5404.929 kb on + strand, within ECOLIN_RS27005 at 5404.930 kb on - strand, within ECOLIN_RS27005 at 5404.983 kb on - strand, within ECOLIN_RS27005 at 5404.999 kb on + strand, within ECOLIN_RS27005 at 5405.000 kb on - strand, within ECOLIN_RS27005 at 5405.000 kb on - strand, within ECOLIN_RS27005 at 5405.002 kb on + strand, within ECOLIN_RS27005 at 5405.284 kb on + strand, within ECOLIN_RS27005 at 5405.302 kb on - strand, within ECOLIN_RS27005
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 5,402,378 + -0.7 5,402,430 + +0.6 5,402,431 - +0.6 5,402,533 + +1.7 5,402,534 - -0.2 5,402,619 + ECOLIN_RS26995 0.16 +0.3 5,402,620 - ECOLIN_RS26995 0.16 -0.1 5,402,620 - ECOLIN_RS26995 0.16 +0.1 5,402,717 + ECOLIN_RS26995 0.31 -0.6 5,402,718 - ECOLIN_RS26995 0.31 -0.4 5,402,718 - ECOLIN_RS26995 0.31 -0.9 5,402,771 + ECOLIN_RS26995 0.40 +0.2 5,402,774 - ECOLIN_RS26995 0.40 -0.3 5,402,776 + ECOLIN_RS26995 0.40 -0.0 5,402,776 + ECOLIN_RS26995 0.40 +0.1 5,402,819 + ECOLIN_RS26995 0.47 -0.1 5,402,819 + ECOLIN_RS26995 0.47 +0.4 5,402,820 - ECOLIN_RS26995 0.47 -0.4 5,402,820 - ECOLIN_RS26995 0.47 +0.3 5,402,821 + ECOLIN_RS26995 0.47 +2.1 5,402,850 + ECOLIN_RS26995 0.52 -2.1 5,402,886 + ECOLIN_RS26995 0.57 +1.5 5,402,887 - ECOLIN_RS26995 0.58 +0.3 5,403,170 - +0.3 5,403,216 - +0.4 5,403,255 - +0.0 5,403,532 + ECOLIN_RS27000 0.31 +0.6 5,403,532 + ECOLIN_RS27000 0.31 +0.3 5,403,533 - ECOLIN_RS27000 0.31 +0.1 5,403,533 - ECOLIN_RS27000 0.31 +0.1 5,403,533 - ECOLIN_RS27000 0.31 +0.3 5,403,761 - ECOLIN_RS27000 0.51 -0.1 5,403,761 - ECOLIN_RS27000 0.51 -0.2 5,403,812 + ECOLIN_RS27000 0.56 +0.3 5,403,813 - ECOLIN_RS27000 0.56 +0.5 5,403,881 + ECOLIN_RS27000 0.62 -1.4 5,403,882 - ECOLIN_RS27000 0.62 -0.5 5,403,889 - ECOLIN_RS27000 0.63 +0.2 5,404,022 + ECOLIN_RS27000 0.75 +0.4 5,404,023 - ECOLIN_RS27000 0.75 -0.4 5,404,215 - -0.1 5,404,290 - -0.1 5,404,298 + -0.7 5,404,320 - -0.2 5,404,320 - +0.2 5,404,376 + -0.1 5,404,431 - -0.1 5,404,735 + ECOLIN_RS27005 0.33 -1.1 5,404,736 - ECOLIN_RS27005 0.33 +0.9 5,404,759 + ECOLIN_RS27005 0.35 +0.0 5,404,759 + ECOLIN_RS27005 0.35 +0.4 5,404,759 + ECOLIN_RS27005 0.35 -0.6 5,404,760 - ECOLIN_RS27005 0.35 -0.1 5,404,760 - ECOLIN_RS27005 0.35 -0.5 5,404,760 - ECOLIN_RS27005 0.35 +0.5 5,404,760 - ECOLIN_RS27005 0.35 -0.0 5,404,760 - ECOLIN_RS27005 0.35 -0.3 5,404,760 - ECOLIN_RS27005 0.35 +0.6 5,404,760 - ECOLIN_RS27005 0.35 +0.3 5,404,898 - ECOLIN_RS27005 0.46 -0.2 5,404,901 + ECOLIN_RS27005 0.47 -0.7 5,404,901 + ECOLIN_RS27005 0.47 +0.4 5,404,901 + ECOLIN_RS27005 0.47 -0.1 5,404,902 - ECOLIN_RS27005 0.47 -0.4 5,404,902 - ECOLIN_RS27005 0.47 -0.1 5,404,902 - ECOLIN_RS27005 0.47 +0.3 5,404,902 - ECOLIN_RS27005 0.47 -0.0 5,404,929 + ECOLIN_RS27005 0.49 +0.0 5,404,929 + ECOLIN_RS27005 0.49 +0.2 5,404,930 - ECOLIN_RS27005 0.49 -0.2 5,404,983 - ECOLIN_RS27005 0.53 +1.0 5,404,999 + ECOLIN_RS27005 0.54 +0.1 5,405,000 - ECOLIN_RS27005 0.54 +1.5 5,405,000 - ECOLIN_RS27005 0.54 +0.1 5,405,002 + ECOLIN_RS27005 0.55 -0.1 5,405,284 + ECOLIN_RS27005 0.77 -0.4 5,405,302 - ECOLIN_RS27005 0.78 -0.3
Or see this region's nucleotide sequence