Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS23530 and ECOLIN_RS23535 overlap by 8 nucleotides ECOLIN_RS23535 and ECOLIN_RS23540 are separated by 38 nucleotides ECOLIN_RS23540 and ECOLIN_RS23545 overlap by 4 nucleotides ECOLIN_RS23545 and ECOLIN_RS23550 are separated by 393 nucleotides
ECOLIN_RS23530: ECOLIN_RS23530 - CidA/LrgA family protein, at 4,742,388 to 4,742,798
_RS23530
ECOLIN_RS23535: ECOLIN_RS23535 - LrgB family protein, at 4,742,791 to 4,743,480
_RS23535
ECOLIN_RS23540: ECOLIN_RS23540 - cation/acetate symporter ActP, at 4,743,519 to 4,745,168
_RS23540
ECOLIN_RS23545: ECOLIN_RS23545 - DUF485 domain-containing protein, at 4,745,165 to 4,745,479
_RS23545
ECOLIN_RS23550: ECOLIN_RS23550 - acetate--CoA ligase, at 4,745,873 to 4,747,831
_RS23550
Position (kb) 4743
4744
4745
4746 Strain fitness (log2 ratio) -1
0
1
2 at 4742.661 kb on + strand, within ECOLIN_RS23530 at 4742.661 kb on + strand, within ECOLIN_RS23530 at 4742.671 kb on + strand, within ECOLIN_RS23530 at 4742.672 kb on - strand, within ECOLIN_RS23530 at 4742.672 kb on - strand, within ECOLIN_RS23530 at 4742.674 kb on + strand, within ECOLIN_RS23530 at 4742.694 kb on - strand, within ECOLIN_RS23530 at 4742.694 kb on - strand, within ECOLIN_RS23530 at 4742.807 kb on + strand at 4742.808 kb on - strand at 4742.811 kb on + strand at 4742.811 kb on + strand at 4742.811 kb on + strand at 4742.812 kb on - strand at 4742.830 kb on - strand at 4742.830 kb on - strand at 4742.830 kb on - strand at 4742.830 kb on - strand at 4742.830 kb on - strand at 4742.838 kb on + strand at 4742.877 kb on + strand, within ECOLIN_RS23535 at 4742.877 kb on + strand, within ECOLIN_RS23535 at 4742.943 kb on + strand, within ECOLIN_RS23535 at 4742.991 kb on - strand, within ECOLIN_RS23535 at 4742.994 kb on - strand, within ECOLIN_RS23535 at 4743.081 kb on - strand, within ECOLIN_RS23535 at 4743.296 kb on + strand, within ECOLIN_RS23535 at 4743.376 kb on + strand, within ECOLIN_RS23535 at 4743.660 kb on - strand at 4743.725 kb on + strand, within ECOLIN_RS23540 at 4743.815 kb on - strand, within ECOLIN_RS23540 at 4743.842 kb on + strand, within ECOLIN_RS23540 at 4744.007 kb on - strand, within ECOLIN_RS23540 at 4744.007 kb on - strand, within ECOLIN_RS23540 at 4744.007 kb on - strand, within ECOLIN_RS23540 at 4744.249 kb on + strand, within ECOLIN_RS23540 at 4744.283 kb on + strand, within ECOLIN_RS23540 at 4744.386 kb on - strand, within ECOLIN_RS23540 at 4744.585 kb on + strand, within ECOLIN_RS23540 at 4744.586 kb on - strand, within ECOLIN_RS23540 at 4744.586 kb on - strand, within ECOLIN_RS23540 at 4744.586 kb on - strand, within ECOLIN_RS23540 at 4744.586 kb on - strand, within ECOLIN_RS23540 at 4744.631 kb on + strand, within ECOLIN_RS23540 at 4744.754 kb on - strand, within ECOLIN_RS23540 at 4744.845 kb on + strand, within ECOLIN_RS23540 at 4744.877 kb on + strand, within ECOLIN_RS23540 at 4744.919 kb on + strand, within ECOLIN_RS23540 at 4744.919 kb on + strand, within ECOLIN_RS23540 at 4744.919 kb on + strand, within ECOLIN_RS23540 at 4744.920 kb on - strand, within ECOLIN_RS23540 at 4744.920 kb on - strand, within ECOLIN_RS23540 at 4744.920 kb on - strand, within ECOLIN_RS23540 at 4744.921 kb on + strand, within ECOLIN_RS23540 at 4744.921 kb on + strand, within ECOLIN_RS23540 at 4744.921 kb on + strand, within ECOLIN_RS23540 at 4744.922 kb on - strand, within ECOLIN_RS23540 at 4744.922 kb on - strand, within ECOLIN_RS23540 at 4744.978 kb on + strand, within ECOLIN_RS23540 at 4744.978 kb on + strand, within ECOLIN_RS23540 at 4744.978 kb on + strand, within ECOLIN_RS23540 at 4745.017 kb on + strand at 4745.236 kb on - strand, within ECOLIN_RS23545 at 4745.239 kb on + strand, within ECOLIN_RS23545 at 4745.354 kb on + strand, within ECOLIN_RS23545 at 4745.370 kb on + strand, within ECOLIN_RS23545 at 4745.502 kb on + strand at 4745.875 kb on - strand at 4746.137 kb on - strand, within ECOLIN_RS23550 at 4746.147 kb on + strand, within ECOLIN_RS23550 at 4746.154 kb on - strand, within ECOLIN_RS23550
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,742,661 + ECOLIN_RS23530 0.66 -0.2 4,742,661 + ECOLIN_RS23530 0.66 +0.8 4,742,671 + ECOLIN_RS23530 0.69 +0.5 4,742,672 - ECOLIN_RS23530 0.69 -0.3 4,742,672 - ECOLIN_RS23530 0.69 +0.6 4,742,674 + ECOLIN_RS23530 0.70 +0.3 4,742,694 - ECOLIN_RS23530 0.74 +0.3 4,742,694 - ECOLIN_RS23530 0.74 +0.4 4,742,807 + +0.0 4,742,808 - -1.0 4,742,811 + -0.2 4,742,811 + -0.1 4,742,811 + +0.5 4,742,812 - +0.1 4,742,830 - +0.2 4,742,830 - +0.3 4,742,830 - +0.1 4,742,830 - +0.0 4,742,830 - +0.5 4,742,838 + +0.2 4,742,877 + ECOLIN_RS23535 0.12 -0.6 4,742,877 + ECOLIN_RS23535 0.12 -0.1 4,742,943 + ECOLIN_RS23535 0.22 -0.3 4,742,991 - ECOLIN_RS23535 0.29 -0.2 4,742,994 - ECOLIN_RS23535 0.29 -0.3 4,743,081 - ECOLIN_RS23535 0.42 -0.6 4,743,296 + ECOLIN_RS23535 0.73 +0.3 4,743,376 + ECOLIN_RS23535 0.85 -0.3 4,743,660 - -0.1 4,743,725 + ECOLIN_RS23540 0.12 -0.1 4,743,815 - ECOLIN_RS23540 0.18 +0.4 4,743,842 + ECOLIN_RS23540 0.20 -0.1 4,744,007 - ECOLIN_RS23540 0.30 -0.6 4,744,007 - ECOLIN_RS23540 0.30 +0.3 4,744,007 - ECOLIN_RS23540 0.30 +0.2 4,744,249 + ECOLIN_RS23540 0.44 +0.3 4,744,283 + ECOLIN_RS23540 0.46 +0.1 4,744,386 - ECOLIN_RS23540 0.53 -0.1 4,744,585 + ECOLIN_RS23540 0.65 +0.6 4,744,586 - ECOLIN_RS23540 0.65 +0.0 4,744,586 - ECOLIN_RS23540 0.65 -0.3 4,744,586 - ECOLIN_RS23540 0.65 -0.5 4,744,586 - ECOLIN_RS23540 0.65 +2.2 4,744,631 + ECOLIN_RS23540 0.67 +0.1 4,744,754 - ECOLIN_RS23540 0.75 +1.5 4,744,845 + ECOLIN_RS23540 0.80 +0.5 4,744,877 + ECOLIN_RS23540 0.82 -0.4 4,744,919 + ECOLIN_RS23540 0.85 -0.1 4,744,919 + ECOLIN_RS23540 0.85 -0.6 4,744,919 + ECOLIN_RS23540 0.85 -0.3 4,744,920 - ECOLIN_RS23540 0.85 +0.5 4,744,920 - ECOLIN_RS23540 0.85 -0.3 4,744,920 - ECOLIN_RS23540 0.85 +0.1 4,744,921 + ECOLIN_RS23540 0.85 +0.0 4,744,921 + ECOLIN_RS23540 0.85 -0.4 4,744,921 + ECOLIN_RS23540 0.85 -1.2 4,744,922 - ECOLIN_RS23540 0.85 -0.2 4,744,922 - ECOLIN_RS23540 0.85 +0.4 4,744,978 + ECOLIN_RS23540 0.88 +0.1 4,744,978 + ECOLIN_RS23540 0.88 -0.2 4,744,978 + ECOLIN_RS23540 0.88 -0.0 4,745,017 + -0.6 4,745,236 - ECOLIN_RS23545 0.23 +0.2 4,745,239 + ECOLIN_RS23545 0.23 +0.1 4,745,354 + ECOLIN_RS23545 0.60 +0.5 4,745,370 + ECOLIN_RS23545 0.65 +0.6 4,745,502 + -0.0 4,745,875 - -1.0 4,746,137 - ECOLIN_RS23550 0.13 +0.2 4,746,147 + ECOLIN_RS23550 0.14 +0.3 4,746,154 - ECOLIN_RS23550 0.14 +0.2
Or see this region's nucleotide sequence