Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS18880

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS18875 and ECOLIN_RS18880 are separated by 21 nucleotidesECOLIN_RS18880 and ECOLIN_RS18885 are separated by 129 nucleotidesECOLIN_RS18885 and ECOLIN_RS18890 overlap by 4 nucleotidesECOLIN_RS18890 and ECOLIN_RS18895 are separated by 55 nucleotides ECOLIN_RS18875: ECOLIN_RS18875 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 3,795,966 to 3,797,255 _RS18875 ECOLIN_RS18880: ECOLIN_RS18880 - Trk system potassium transporter TrkA, at 3,797,277 to 3,798,653 _RS18880 ECOLIN_RS18885: ECOLIN_RS18885 - large-conductance mechanosensitive channel protein MscL, at 3,798,783 to 3,799,196 _RS18885 ECOLIN_RS18890: ECOLIN_RS18890 - alternative ribosome-rescue factor ArfA, at 3,799,193 to 3,799,411 _RS18890 ECOLIN_RS18895: ECOLIN_RS18895 - Zn(2+)-responsive transcriptional regulator, at 3,799,467 to 3,799,892 _RS18895 Position (kb) 3797 3798 3799Strain fitness (log2 ratio) -1 0 1at 3796.754 kb on + strand, within ECOLIN_RS18875at 3796.976 kb on + strand, within ECOLIN_RS18875at 3796.976 kb on + strand, within ECOLIN_RS18875at 3797.079 kb on + strand, within ECOLIN_RS18875at 3798.651 kb on + strandat 3798.779 kb on + strandat 3798.925 kb on + strand, within ECOLIN_RS18885at 3798.925 kb on + strand, within ECOLIN_RS18885at 3799.075 kb on + strand, within ECOLIN_RS18885at 3799.391 kb on - strandat 3799.394 kb on - strandat 3799.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,796,754 + ECOLIN_RS18875 0.61 -0.8
3,796,976 + ECOLIN_RS18875 0.78 -0.4
3,796,976 + ECOLIN_RS18875 0.78 +0.2
3,797,079 + ECOLIN_RS18875 0.86 -0.7
3,798,651 + -0.3
3,798,779 + +0.7
3,798,925 + ECOLIN_RS18885 0.34 -0.1
3,798,925 + ECOLIN_RS18885 0.34 -0.3
3,799,075 + ECOLIN_RS18885 0.71 -0.0
3,799,391 - -0.7
3,799,394 - +0.5
3,799,394 - +0.4

Or see this region's nucleotide sequence