Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS10085

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS10080 and ECOLIN_RS10085 are separated by 3 nucleotidesECOLIN_RS10085 and ECOLIN_RS10090 are separated by 183 nucleotides ECOLIN_RS10080: ECOLIN_RS10080 - aminodeoxychorismate synthase component 1, at 1,978,790 to 1,980,151 _RS10080 ECOLIN_RS10085: ECOLIN_RS10085 - CoA pyrophosphatase, at 1,980,155 to 1,980,733 _RS10085 ECOLIN_RS10090: ECOLIN_RS10090 - L-serine ammonia-lyase, at 1,980,917 to 1,982,281 _RS10090 Position (kb) 1980 1981Strain fitness (log2 ratio) -1 0 1at 1979.715 kb on + strand, within ECOLIN_RS10080

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,979,715 + ECOLIN_RS10080 0.68 -1.0

Or see this region's nucleotide sequence