Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS03885

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS03880 and ECOLIN_RS03885 overlap by 1 nucleotidesECOLIN_RS03885 and ECOLIN_RS03890 are separated by 239 nucleotides ECOLIN_RS03880: ECOLIN_RS03880 - ADP-forming succinate--CoA ligase subunit beta, at 794,516 to 795,682 _RS03880 ECOLIN_RS03885: ECOLIN_RS03885 - succinate--CoA ligase subunit alpha, at 795,682 to 796,551 _RS03885 ECOLIN_RS03890: ECOLIN_RS03890 - tetratricopeptide repeat protein, at 796,791 to 797,906 _RS03890 Position (kb) 795 796 797Strain fitness (log2 ratio) -1 0 1at 796.553 kb on + strandat 796.753 kb on - strandat 797.047 kb on - strand, within ECOLIN_RS03890

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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796,553 + -0.1
796,753 - +0.3
797,047 - ECOLIN_RS03890 0.23 +0.4

Or see this region's nucleotide sequence