Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS00150

Experiment: Aerobic; Aluminium sulfate 215

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS00145 and ABCV34_RS00150 overlap by 4 nucleotidesABCV34_RS00150 and ABCV34_RS00155 overlap by 4 nucleotides ABCV34_RS00145: ABCV34_RS00145 - conjugal transfer protein TraG, at 22,846 to 24,837 _RS00145 ABCV34_RS00150: ABCV34_RS00150 - CopG family transcriptional regulator, at 24,834 to 25,286 _RS00150 ABCV34_RS00155: ABCV34_RS00155 - P-type conjugative transfer ATPase TrbB, at 25,283 to 26,353 _RS00155 Position (kb) 24 25 26Strain fitness (log2 ratio) -2 -1 0 1at 23.842 kb on + strand, within ABCV34_RS00145at 23.929 kb on + strand, within ABCV34_RS00145at 23.929 kb on + strand, within ABCV34_RS00145at 23.930 kb on - strand, within ABCV34_RS00145at 23.930 kb on - strand, within ABCV34_RS00145at 23.930 kb on - strand, within ABCV34_RS00145at 23.930 kb on - strand, within ABCV34_RS00145at 24.188 kb on - strand, within ABCV34_RS00145at 24.316 kb on + strand, within ABCV34_RS00145at 24.316 kb on + strand, within ABCV34_RS00145at 24.317 kb on - strand, within ABCV34_RS00145at 24.317 kb on - strand, within ABCV34_RS00145at 24.317 kb on - strand, within ABCV34_RS00145at 24.317 kb on - strand, within ABCV34_RS00145at 24.478 kb on + strand, within ABCV34_RS00145at 24.478 kb on + strand, within ABCV34_RS00145at 24.478 kb on + strand, within ABCV34_RS00145at 24.479 kb on - strand, within ABCV34_RS00145at 24.479 kb on - strand, within ABCV34_RS00145at 24.479 kb on - strand, within ABCV34_RS00145at 24.481 kb on + strand, within ABCV34_RS00145at 24.481 kb on + strand, within ABCV34_RS00145at 24.482 kb on - strand, within ABCV34_RS00145at 24.688 kb on + strandat 24.688 kb on + strandat 24.688 kb on + strandat 24.688 kb on + strandat 24.688 kb on + strandat 24.688 kb on + strandat 24.688 kb on + strandat 24.688 kb on + strandat 24.688 kb on + strandat 24.688 kb on + strandat 24.689 kb on - strandat 24.689 kb on - strandat 24.689 kb on - strandat 24.689 kb on - strandat 24.689 kb on - strandat 24.689 kb on - strandat 24.833 kb on + strandat 24.833 kb on + strandat 24.833 kb on + strandat 24.833 kb on + strandat 24.833 kb on + strandat 24.833 kb on + strandat 24.834 kb on - strandat 25.074 kb on + strand, within ABCV34_RS00150at 25.074 kb on + strand, within ABCV34_RS00150at 25.074 kb on + strand, within ABCV34_RS00150at 25.074 kb on + strand, within ABCV34_RS00150at 25.074 kb on + strand, within ABCV34_RS00150at 25.074 kb on + strand, within ABCV34_RS00150at 25.075 kb on - strand, within ABCV34_RS00150at 25.075 kb on - strand, within ABCV34_RS00150at 25.075 kb on - strand, within ABCV34_RS00150at 25.075 kb on - strand, within ABCV34_RS00150at 25.084 kb on - strand, within ABCV34_RS00150at 25.084 kb on - strand, within ABCV34_RS00150at 25.086 kb on + strand, within ABCV34_RS00150at 25.086 kb on + strand, within ABCV34_RS00150at 25.086 kb on + strand, within ABCV34_RS00150at 25.087 kb on - strand, within ABCV34_RS00150at 25.087 kb on - strand, within ABCV34_RS00150at 25.087 kb on - strand, within ABCV34_RS00150at 25.087 kb on - strand, within ABCV34_RS00150at 25.087 kb on - strand, within ABCV34_RS00150at 25.221 kb on + strand, within ABCV34_RS00150at 25.222 kb on - strand, within ABCV34_RS00150at 25.322 kb on - strandat 25.700 kb on + strand, within ABCV34_RS00155at 25.700 kb on + strand, within ABCV34_RS00155at 25.700 kb on + strand, within ABCV34_RS00155at 25.700 kb on + strand, within ABCV34_RS00155at 25.700 kb on + strand, within ABCV34_RS00155at 25.700 kb on + strand, within ABCV34_RS00155at 25.701 kb on - strand, within ABCV34_RS00155at 25.701 kb on - strand, within ABCV34_RS00155at 25.701 kb on - strand, within ABCV34_RS00155at 25.701 kb on - strand, within ABCV34_RS00155at 25.701 kb on - strand, within ABCV34_RS00155at 25.701 kb on - strand, within ABCV34_RS00155at 25.701 kb on - strand, within ABCV34_RS00155at 25.701 kb on - strand, within ABCV34_RS00155at 25.701 kb on - strand, within ABCV34_RS00155at 25.908 kb on + strand, within ABCV34_RS00155at 25.908 kb on + strand, within ABCV34_RS00155at 25.908 kb on + strand, within ABCV34_RS00155at 25.909 kb on - strand, within ABCV34_RS00155at 25.909 kb on - strand, within ABCV34_RS00155at 25.909 kb on - strand, within ABCV34_RS00155at 25.909 kb on - strand, within ABCV34_RS00155at 25.909 kb on - strand, within ABCV34_RS00155at 25.909 kb on - strand, within ABCV34_RS00155at 25.909 kb on - strand, within ABCV34_RS00155at 25.909 kb on - strand, within ABCV34_RS00155at 25.909 kb on - strand, within ABCV34_RS00155at 25.909 kb on - strand, within ABCV34_RS00155at 26.100 kb on + strand, within ABCV34_RS00155at 26.101 kb on - strand, within ABCV34_RS00155at 26.101 kb on - strand, within ABCV34_RS00155at 26.101 kb on - strand, within ABCV34_RS00155at 26.101 kb on - strand, within ABCV34_RS00155at 26.252 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aerobic; Aluminium sulfate 215
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23,842 + ABCV34_RS00145 0.50 -1.9
23,929 + ABCV34_RS00145 0.54 -1.6
23,929 + ABCV34_RS00145 0.54 -0.5
23,930 - ABCV34_RS00145 0.54 -1.5
23,930 - ABCV34_RS00145 0.54 -0.9
23,930 - ABCV34_RS00145 0.54 -2.7
23,930 - ABCV34_RS00145 0.54 -2.2
24,188 - ABCV34_RS00145 0.67 -1.2
24,316 + ABCV34_RS00145 0.74 -1.9
24,316 + ABCV34_RS00145 0.74 -0.9
24,317 - ABCV34_RS00145 0.74 -1.0
24,317 - ABCV34_RS00145 0.74 -1.6
24,317 - ABCV34_RS00145 0.74 -1.8
24,317 - ABCV34_RS00145 0.74 -0.8
24,478 + ABCV34_RS00145 0.82 -0.4
24,478 + ABCV34_RS00145 0.82 -1.3
24,478 + ABCV34_RS00145 0.82 -1.4
24,479 - ABCV34_RS00145 0.82 -0.4
24,479 - ABCV34_RS00145 0.82 -0.9
24,479 - ABCV34_RS00145 0.82 -1.5
24,481 + ABCV34_RS00145 0.82 -1.0
24,481 + ABCV34_RS00145 0.82 -0.0
24,482 - ABCV34_RS00145 0.82 -1.1
24,688 + -2.1
24,688 + -0.1
24,688 + -2.4
24,688 + -1.1
24,688 + -1.6
24,688 + -2.2
24,688 + -2.2
24,688 + -1.5
24,688 + -1.0
24,688 + -1.6
24,689 - -1.3
24,689 - -2.0
24,689 - -1.6
24,689 - -2.2
24,689 - -0.0
24,689 - -2.2
24,833 + -2.1
24,833 + -1.3
24,833 + -2.3
24,833 + -2.7
24,833 + -1.9
24,833 + -1.5
24,834 - -1.3
25,074 + ABCV34_RS00150 0.53 -0.9
25,074 + ABCV34_RS00150 0.53 -1.3
25,074 + ABCV34_RS00150 0.53 -1.0
25,074 + ABCV34_RS00150 0.53 -2.5
25,074 + ABCV34_RS00150 0.53 -1.5
25,074 + ABCV34_RS00150 0.53 -1.0
25,075 - ABCV34_RS00150 0.53 -1.1
25,075 - ABCV34_RS00150 0.53 -0.1
25,075 - ABCV34_RS00150 0.53 -1.5
25,075 - ABCV34_RS00150 0.53 -1.5
25,084 - ABCV34_RS00150 0.55 -1.6
25,084 - ABCV34_RS00150 0.55 -0.9
25,086 + ABCV34_RS00150 0.56 -0.9
25,086 + ABCV34_RS00150 0.56 -1.7
25,086 + ABCV34_RS00150 0.56 -2.1
25,087 - ABCV34_RS00150 0.56 -1.3
25,087 - ABCV34_RS00150 0.56 -0.6
25,087 - ABCV34_RS00150 0.56 -0.3
25,087 - ABCV34_RS00150 0.56 -1.2
25,087 - ABCV34_RS00150 0.56 -1.2
25,221 + ABCV34_RS00150 0.85 -2.4
25,222 - ABCV34_RS00150 0.86 -1.5
25,322 - -1.4
25,700 + ABCV34_RS00155 0.39 -1.0
25,700 + ABCV34_RS00155 0.39 -2.1
25,700 + ABCV34_RS00155 0.39 -1.6
25,700 + ABCV34_RS00155 0.39 -1.5
25,700 + ABCV34_RS00155 0.39 -1.5
25,700 + ABCV34_RS00155 0.39 -0.8
25,701 - ABCV34_RS00155 0.39 -2.0
25,701 - ABCV34_RS00155 0.39 -2.0
25,701 - ABCV34_RS00155 0.39 -0.3
25,701 - ABCV34_RS00155 0.39 -1.1
25,701 - ABCV34_RS00155 0.39 +0.8
25,701 - ABCV34_RS00155 0.39 -1.7
25,701 - ABCV34_RS00155 0.39 -1.1
25,701 - ABCV34_RS00155 0.39 -1.9
25,701 - ABCV34_RS00155 0.39 -1.8
25,908 + ABCV34_RS00155 0.58 -1.2
25,908 + ABCV34_RS00155 0.58 -1.5
25,908 + ABCV34_RS00155 0.58 +1.6
25,909 - ABCV34_RS00155 0.58 -1.3
25,909 - ABCV34_RS00155 0.58 -1.7
25,909 - ABCV34_RS00155 0.58 -1.5
25,909 - ABCV34_RS00155 0.58 -1.7
25,909 - ABCV34_RS00155 0.58 -2.0
25,909 - ABCV34_RS00155 0.58 -0.8
25,909 - ABCV34_RS00155 0.58 -2.2
25,909 - ABCV34_RS00155 0.58 -2.6
25,909 - ABCV34_RS00155 0.58 -0.9
25,909 - ABCV34_RS00155 0.58 -1.8
26,100 + ABCV34_RS00155 0.76 -1.9
26,101 - ABCV34_RS00155 0.76 -1.8
26,101 - ABCV34_RS00155 0.76 -1.8
26,101 - ABCV34_RS00155 0.76 -2.0
26,101 - ABCV34_RS00155 0.76 -0.5
26,252 + +0.1

Or see this region's nucleotide sequence