Experiment: Aerobic; FW104 COMM 1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS00980 and ABCV34_RS00985 are separated by 107 nucleotides ABCV34_RS00985 and ABCV34_RS00990 are separated by 69 nucleotides ABCV34_RS00990 and ABCV34_RS00995 are separated by 230 nucleotides
ABCV34_RS00980: ABCV34_RS00980 - pirin family protein, at 212,345 to 213,214
_RS00980
ABCV34_RS00985: ABCV34_RS00985 - NAD(P)H-dependent oxidoreductase, at 213,322 to 213,897
_RS00985
ABCV34_RS00990: ABCV34_RS00990 - virulence factor, at 213,967 to 214,290
_RS00990
ABCV34_RS00995: ABCV34_RS00995 - dienelactone hydrolase family protein, at 214,521 to 215,189
_RS00995
Position (kb) 213
214
215 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 213.017 kb on - strand, within ABCV34_RS00980 at 213.017 kb on - strand, within ABCV34_RS00980 at 213.026 kb on + strand, within ABCV34_RS00980 at 213.135 kb on - strand at 213.154 kb on + strand at 213.154 kb on + strand at 213.154 kb on + strand at 213.154 kb on + strand at 213.155 kb on - strand at 213.155 kb on - strand at 213.155 kb on - strand at 213.155 kb on - strand at 213.212 kb on + strand at 213.321 kb on + strand at 213.321 kb on + strand at 213.321 kb on + strand at 213.321 kb on + strand at 213.321 kb on + strand at 213.321 kb on + strand at 213.321 kb on + strand at 213.321 kb on + strand at 213.321 kb on + strand at 213.322 kb on - strand at 213.322 kb on - strand at 213.322 kb on - strand at 213.322 kb on - strand at 213.322 kb on - strand at 213.322 kb on - strand at 213.322 kb on - strand at 213.322 kb on - strand at 213.322 kb on - strand at 213.322 kb on - strand at 213.322 kb on - strand at 213.322 kb on - strand at 213.322 kb on - strand at 213.338 kb on + strand at 213.338 kb on + strand at 213.339 kb on - strand at 213.339 kb on - strand at 213.370 kb on + strand at 213.370 kb on + strand at 213.370 kb on + strand at 213.370 kb on + strand at 213.370 kb on + strand at 213.370 kb on + strand at 213.370 kb on + strand at 213.370 kb on + strand at 213.370 kb on + strand at 213.370 kb on + strand at 213.370 kb on + strand at 213.370 kb on + strand at 213.371 kb on - strand at 213.371 kb on - strand at 213.371 kb on - strand at 213.371 kb on - strand at 213.371 kb on - strand at 213.371 kb on - strand at 213.371 kb on - strand at 213.371 kb on - strand at 213.457 kb on + strand, within ABCV34_RS00985 at 213.457 kb on + strand, within ABCV34_RS00985 at 213.457 kb on + strand, within ABCV34_RS00985 at 213.457 kb on + strand, within ABCV34_RS00985 at 213.457 kb on + strand, within ABCV34_RS00985 at 213.457 kb on + strand, within ABCV34_RS00985 at 213.458 kb on - strand, within ABCV34_RS00985 at 213.458 kb on - strand, within ABCV34_RS00985 at 213.458 kb on - strand, within ABCV34_RS00985 at 213.458 kb on - strand, within ABCV34_RS00985 at 213.458 kb on - strand, within ABCV34_RS00985 at 213.458 kb on - strand, within ABCV34_RS00985 at 213.458 kb on - strand, within ABCV34_RS00985 at 213.556 kb on + strand, within ABCV34_RS00985 at 213.556 kb on + strand, within ABCV34_RS00985 at 213.556 kb on + strand, within ABCV34_RS00985 at 213.557 kb on - strand, within ABCV34_RS00985 at 213.557 kb on - strand, within ABCV34_RS00985 at 213.562 kb on + strand, within ABCV34_RS00985 at 213.562 kb on + strand, within ABCV34_RS00985 at 213.562 kb on + strand, within ABCV34_RS00985 at 213.562 kb on + strand, within ABCV34_RS00985 at 213.562 kb on + strand, within ABCV34_RS00985 at 213.563 kb on - strand, within ABCV34_RS00985 at 213.563 kb on - strand, within ABCV34_RS00985 at 213.563 kb on - strand, within ABCV34_RS00985 at 213.691 kb on + strand, within ABCV34_RS00985 at 213.691 kb on + strand, within ABCV34_RS00985 at 213.692 kb on - strand, within ABCV34_RS00985 at 213.692 kb on - strand, within ABCV34_RS00985 at 213.692 kb on - strand, within ABCV34_RS00985 at 213.715 kb on + strand, within ABCV34_RS00985 at 213.715 kb on + strand, within ABCV34_RS00985 at 213.715 kb on + strand, within ABCV34_RS00985 at 213.715 kb on + strand, within ABCV34_RS00985 at 213.716 kb on - strand, within ABCV34_RS00985 at 213.716 kb on - strand, within ABCV34_RS00985 at 214.046 kb on + strand, within ABCV34_RS00990 at 214.046 kb on + strand, within ABCV34_RS00990 at 214.046 kb on + strand, within ABCV34_RS00990 at 214.047 kb on - strand, within ABCV34_RS00990 at 214.080 kb on - strand, within ABCV34_RS00990 at 214.080 kb on - strand, within ABCV34_RS00990 at 214.097 kb on + strand, within ABCV34_RS00990 at 214.097 kb on + strand, within ABCV34_RS00990 at 214.098 kb on - strand, within ABCV34_RS00990 at 214.098 kb on - strand, within ABCV34_RS00990 at 214.098 kb on - strand, within ABCV34_RS00990 at 214.115 kb on - strand, within ABCV34_RS00990 at 214.115 kb on - strand, within ABCV34_RS00990 at 214.115 kb on - strand, within ABCV34_RS00990 at 214.137 kb on - strand, within ABCV34_RS00990 at 214.137 kb on - strand, within ABCV34_RS00990 at 214.160 kb on + strand, within ABCV34_RS00990 at 214.160 kb on + strand, within ABCV34_RS00990 at 214.160 kb on + strand, within ABCV34_RS00990 at 214.160 kb on + strand, within ABCV34_RS00990 at 214.160 kb on + strand, within ABCV34_RS00990 at 214.161 kb on - strand, within ABCV34_RS00990 at 214.161 kb on - strand, within ABCV34_RS00990 at 214.161 kb on - strand, within ABCV34_RS00990 at 214.161 kb on - strand, within ABCV34_RS00990 at 214.161 kb on - strand, within ABCV34_RS00990 at 214.161 kb on - strand, within ABCV34_RS00990 at 214.352 kb on + strand at 214.353 kb on - strand at 214.353 kb on - strand at 214.354 kb on + strand at 214.585 kb on + strand at 214.585 kb on + strand at 214.585 kb on + strand at 214.585 kb on + strand at 214.585 kb on + strand at 214.586 kb on - strand at 214.586 kb on - strand at 214.586 kb on - strand at 214.586 kb on - strand at 214.630 kb on + strand, within ABCV34_RS00995 at 214.630 kb on + strand, within ABCV34_RS00995 at 214.630 kb on + strand, within ABCV34_RS00995 at 214.631 kb on - strand, within ABCV34_RS00995 at 214.631 kb on - strand, within ABCV34_RS00995 at 214.631 kb on - strand, within ABCV34_RS00995 at 214.631 kb on - strand, within ABCV34_RS00995 at 214.631 kb on - strand, within ABCV34_RS00995 at 214.739 kb on + strand, within ABCV34_RS00995 at 214.740 kb on - strand, within ABCV34_RS00995 at 214.796 kb on + strand, within ABCV34_RS00995 at 214.797 kb on - strand, within ABCV34_RS00995 at 214.828 kb on + strand, within ABCV34_RS00995 at 214.828 kb on + strand, within ABCV34_RS00995 at 214.829 kb on - strand, within ABCV34_RS00995 at 214.843 kb on + strand, within ABCV34_RS00995 at 214.843 kb on + strand, within ABCV34_RS00995 at 214.844 kb on - strand, within ABCV34_RS00995 at 214.936 kb on + strand, within ABCV34_RS00995 at 214.936 kb on + strand, within ABCV34_RS00995 at 214.937 kb on - strand, within ABCV34_RS00995 at 214.937 kb on - strand, within ABCV34_RS00995 at 214.941 kb on + strand, within ABCV34_RS00995 at 214.942 kb on - strand, within ABCV34_RS00995 at 214.942 kb on - strand, within ABCV34_RS00995 at 214.969 kb on + strand, within ABCV34_RS00995 at 214.970 kb on - strand, within ABCV34_RS00995 at 214.970 kb on - strand, within ABCV34_RS00995 at 215.074 kb on + strand, within ABCV34_RS00995 at 215.074 kb on + strand, within ABCV34_RS00995 at 215.074 kb on + strand, within ABCV34_RS00995 at 215.074 kb on + strand, within ABCV34_RS00995 at 215.075 kb on - strand, within ABCV34_RS00995 at 215.075 kb on - strand, within ABCV34_RS00995 at 215.075 kb on - strand, within ABCV34_RS00995 at 215.143 kb on + strand at 215.143 kb on + strand at 215.143 kb on + strand at 215.143 kb on + strand at 215.143 kb on + strand at 215.143 kb on + strand at 215.144 kb on - strand at 215.144 kb on - strand at 215.144 kb on - strand at 215.144 kb on - strand at 215.144 kb on - strand at 215.144 kb on - strand at 215.266 kb on + strand at 215.266 kb on + strand at 215.266 kb on + strand at 215.266 kb on + strand at 215.269 kb on + strand at 215.269 kb on + strand at 215.269 kb on + strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.270 kb on - strand at 215.276 kb on - strand at 215.276 kb on - strand at 215.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aerobic; FW104 COMM 1 X remove 213,017 - ABCV34_RS00980 0.77 -1.5 213,017 - ABCV34_RS00980 0.77 -1.3 213,026 + ABCV34_RS00980 0.78 -2.6 213,135 - -2.0 213,154 + -1.9 213,154 + -2.7 213,154 + -2.5 213,154 + -3.4 213,155 - -2.3 213,155 - -2.2 213,155 - -3.2 213,155 - -1.5 213,212 + -3.2 213,321 + -1.4 213,321 + -1.0 213,321 + -1.5 213,321 + -0.7 213,321 + -2.5 213,321 + -3.1 213,321 + -3.1 213,321 + -2.0 213,321 + -1.7 213,322 - -1.6 213,322 - -1.9 213,322 - -1.9 213,322 - -2.0 213,322 - -1.9 213,322 - -2.4 213,322 - -2.5 213,322 - -3.6 213,322 - -2.7 213,322 - -1.8 213,322 - -1.9 213,322 - -2.5 213,322 - -2.3 213,338 + -1.6 213,338 + -1.9 213,339 - -3.1 213,339 - -2.4 213,370 + -1.4 213,370 + -2.0 213,370 + -1.6 213,370 + -1.4 213,370 + -2.1 213,370 + -1.6 213,370 + -2.8 213,370 + -3.2 213,370 + -1.8 213,370 + -1.8 213,370 + -0.6 213,370 + -0.4 213,371 - -2.4 213,371 - -1.8 213,371 - -1.4 213,371 - -1.6 213,371 - -2.0 213,371 - -1.8 213,371 - -0.0 213,371 - -2.7 213,457 + ABCV34_RS00985 0.23 -2.6 213,457 + ABCV34_RS00985 0.23 -2.8 213,457 + ABCV34_RS00985 0.23 -0.8 213,457 + ABCV34_RS00985 0.23 -2.4 213,457 + ABCV34_RS00985 0.23 +0.4 213,457 + ABCV34_RS00985 0.23 -2.4 213,458 - ABCV34_RS00985 0.24 -1.7 213,458 - ABCV34_RS00985 0.24 -2.8 213,458 - ABCV34_RS00985 0.24 -2.7 213,458 - ABCV34_RS00985 0.24 -2.1 213,458 - ABCV34_RS00985 0.24 -2.7 213,458 - ABCV34_RS00985 0.24 -1.7 213,458 - ABCV34_RS00985 0.24 -2.4 213,556 + ABCV34_RS00985 0.41 -1.6 213,556 + ABCV34_RS00985 0.41 -1.1 213,556 + ABCV34_RS00985 0.41 -2.0 213,557 - ABCV34_RS00985 0.41 -2.6 213,557 - ABCV34_RS00985 0.41 -3.2 213,562 + ABCV34_RS00985 0.42 -1.9 213,562 + ABCV34_RS00985 0.42 -1.2 213,562 + ABCV34_RS00985 0.42 -1.8 213,562 + ABCV34_RS00985 0.42 -1.9 213,562 + ABCV34_RS00985 0.42 -2.9 213,563 - ABCV34_RS00985 0.42 -2.0 213,563 - ABCV34_RS00985 0.42 -1.0 213,563 - ABCV34_RS00985 0.42 +1.5 213,691 + ABCV34_RS00985 0.64 -1.4 213,691 + ABCV34_RS00985 0.64 -2.3 213,692 - ABCV34_RS00985 0.64 -2.5 213,692 - ABCV34_RS00985 0.64 -1.8 213,692 - ABCV34_RS00985 0.64 -1.7 213,715 + ABCV34_RS00985 0.68 -1.5 213,715 + ABCV34_RS00985 0.68 -2.8 213,715 + ABCV34_RS00985 0.68 -3.0 213,715 + ABCV34_RS00985 0.68 -2.1 213,716 - ABCV34_RS00985 0.68 -1.2 213,716 - ABCV34_RS00985 0.68 -1.4 214,046 + ABCV34_RS00990 0.24 -2.5 214,046 + ABCV34_RS00990 0.24 -2.0 214,046 + ABCV34_RS00990 0.24 -1.2 214,047 - ABCV34_RS00990 0.25 -3.3 214,080 - ABCV34_RS00990 0.35 -2.1 214,080 - ABCV34_RS00990 0.35 -2.4 214,097 + ABCV34_RS00990 0.40 -1.2 214,097 + ABCV34_RS00990 0.40 -2.8 214,098 - ABCV34_RS00990 0.40 -2.2 214,098 - ABCV34_RS00990 0.40 -2.7 214,098 - ABCV34_RS00990 0.40 -2.5 214,115 - ABCV34_RS00990 0.46 -1.0 214,115 - ABCV34_RS00990 0.46 -2.2 214,115 - ABCV34_RS00990 0.46 -1.8 214,137 - ABCV34_RS00990 0.52 -2.1 214,137 - ABCV34_RS00990 0.52 -2.0 214,160 + ABCV34_RS00990 0.60 -1.9 214,160 + ABCV34_RS00990 0.60 -1.8 214,160 + ABCV34_RS00990 0.60 -0.7 214,160 + ABCV34_RS00990 0.60 -2.1 214,160 + ABCV34_RS00990 0.60 -3.6 214,161 - ABCV34_RS00990 0.60 -2.0 214,161 - ABCV34_RS00990 0.60 -1.8 214,161 - ABCV34_RS00990 0.60 -2.5 214,161 - ABCV34_RS00990 0.60 -1.5 214,161 - ABCV34_RS00990 0.60 -2.0 214,161 - ABCV34_RS00990 0.60 -1.4 214,352 + -2.1 214,353 - -1.4 214,353 - -1.1 214,354 + -0.4 214,585 + -2.1 214,585 + -0.7 214,585 + -2.4 214,585 + -2.1 214,585 + -2.4 214,586 - -4.1 214,586 - -2.1 214,586 - -1.8 214,586 - -1.5 214,630 + ABCV34_RS00995 0.16 -2.2 214,630 + ABCV34_RS00995 0.16 -2.7 214,630 + ABCV34_RS00995 0.16 -2.4 214,631 - ABCV34_RS00995 0.16 -2.3 214,631 - ABCV34_RS00995 0.16 -1.4 214,631 - ABCV34_RS00995 0.16 -1.7 214,631 - ABCV34_RS00995 0.16 -0.0 214,631 - ABCV34_RS00995 0.16 -2.5 214,739 + ABCV34_RS00995 0.33 -1.4 214,740 - ABCV34_RS00995 0.33 -2.5 214,796 + ABCV34_RS00995 0.41 -1.9 214,797 - ABCV34_RS00995 0.41 -2.1 214,828 + ABCV34_RS00995 0.46 -2.3 214,828 + ABCV34_RS00995 0.46 -1.7 214,829 - ABCV34_RS00995 0.46 -1.6 214,843 + ABCV34_RS00995 0.48 -1.9 214,843 + ABCV34_RS00995 0.48 -2.7 214,844 - ABCV34_RS00995 0.48 -1.7 214,936 + ABCV34_RS00995 0.62 -1.1 214,936 + ABCV34_RS00995 0.62 -2.5 214,937 - ABCV34_RS00995 0.62 -1.3 214,937 - ABCV34_RS00995 0.62 -2.6 214,941 + ABCV34_RS00995 0.63 -2.2 214,942 - ABCV34_RS00995 0.63 -3.6 214,942 - ABCV34_RS00995 0.63 -2.0 214,969 + ABCV34_RS00995 0.67 -2.3 214,970 - ABCV34_RS00995 0.67 -1.8 214,970 - ABCV34_RS00995 0.67 -2.3 215,074 + ABCV34_RS00995 0.83 -2.5 215,074 + ABCV34_RS00995 0.83 -2.7 215,074 + ABCV34_RS00995 0.83 -1.6 215,074 + ABCV34_RS00995 0.83 -1.6 215,075 - ABCV34_RS00995 0.83 -3.1 215,075 - ABCV34_RS00995 0.83 -1.8 215,075 - ABCV34_RS00995 0.83 -2.1 215,143 + -2.8 215,143 + -4.2 215,143 + -1.7 215,143 + -3.5 215,143 + -1.2 215,143 + -3.1 215,144 - -0.6 215,144 - -2.7 215,144 - -1.9 215,144 - -1.3 215,144 - -1.8 215,144 - -1.8 215,266 + -2.0 215,266 + -1.5 215,266 + -2.6 215,266 + -0.6 215,269 + -2.1 215,269 + -1.2 215,269 + -1.3 215,270 - -1.0 215,270 - -0.6 215,270 - -1.8 215,270 - -1.5 215,270 - -2.0 215,270 - -1.4 215,270 - -1.8 215,270 - -2.0 215,276 - -1.9 215,276 - -0.7 215,290 - -2.0
Or see this region's nucleotide sequence