Experiment: Aerobic; FW104 COMM 1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS00590 and ABCV34_RS00595 are separated by 15 nucleotides ABCV34_RS00595 and ABCV34_RS00600 are separated by 62 nucleotides ABCV34_RS00600 and ABCV34_RS00605 are separated by 11 nucleotides
ABCV34_RS00590: ABCV34_RS00590 - branched-chain amino acid ABC transporter permease, at 125,707 to 126,588
_RS00590
ABCV34_RS00595: ABCV34_RS00595 - ABC transporter substrate-binding protein, at 126,604 to 127,761
_RS00595
ABCV34_RS00600: ABCV34_RS00600 - alpha/beta hydrolase, at 127,824 to 128,660
_RS00600
ABCV34_RS00605: ABCV34_RS00605 - benzoate-CoA ligase family protein, at 128,672 to 130,234
_RS00605
Position (kb) 126
127
128 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 125.622 kb on - strand at 125.622 kb on - strand at 125.624 kb on + strand at 125.624 kb on + strand at 125.624 kb on + strand at 125.624 kb on + strand at 125.624 kb on + strand at 125.624 kb on + strand at 125.624 kb on + strand at 125.624 kb on + strand at 125.624 kb on + strand at 125.625 kb on - strand at 125.625 kb on - strand at 125.625 kb on - strand at 125.625 kb on - strand at 125.635 kb on + strand at 125.765 kb on + strand at 125.766 kb on - strand at 125.766 kb on - strand at 125.812 kb on - strand, within ABCV34_RS00590 at 125.812 kb on - strand, within ABCV34_RS00590 at 125.924 kb on + strand, within ABCV34_RS00590 at 125.925 kb on - strand, within ABCV34_RS00590 at 126.098 kb on + strand, within ABCV34_RS00590 at 126.098 kb on + strand, within ABCV34_RS00590 at 126.098 kb on + strand, within ABCV34_RS00590 at 126.099 kb on - strand, within ABCV34_RS00590 at 126.099 kb on - strand, within ABCV34_RS00590 at 126.099 kb on - strand, within ABCV34_RS00590 at 126.155 kb on + strand, within ABCV34_RS00590 at 126.156 kb on - strand, within ABCV34_RS00590 at 126.156 kb on - strand, within ABCV34_RS00590 at 126.156 kb on - strand, within ABCV34_RS00590 at 126.272 kb on + strand, within ABCV34_RS00590 at 126.272 kb on + strand, within ABCV34_RS00590 at 126.272 kb on + strand, within ABCV34_RS00590 at 126.273 kb on - strand, within ABCV34_RS00590 at 126.273 kb on - strand, within ABCV34_RS00590 at 126.273 kb on - strand, within ABCV34_RS00590 at 126.273 kb on - strand, within ABCV34_RS00590 at 126.308 kb on + strand, within ABCV34_RS00590 at 126.309 kb on - strand, within ABCV34_RS00590 at 126.341 kb on + strand, within ABCV34_RS00590 at 126.341 kb on + strand, within ABCV34_RS00590 at 126.341 kb on + strand, within ABCV34_RS00590 at 126.342 kb on - strand, within ABCV34_RS00590 at 126.342 kb on - strand, within ABCV34_RS00590 at 126.440 kb on + strand, within ABCV34_RS00590 at 126.440 kb on + strand, within ABCV34_RS00590 at 126.440 kb on + strand, within ABCV34_RS00590 at 126.440 kb on + strand, within ABCV34_RS00590 at 126.441 kb on - strand, within ABCV34_RS00590 at 126.441 kb on - strand, within ABCV34_RS00590 at 126.441 kb on - strand, within ABCV34_RS00590 at 126.455 kb on + strand, within ABCV34_RS00590 at 126.455 kb on + strand, within ABCV34_RS00590 at 126.455 kb on + strand, within ABCV34_RS00590 at 126.455 kb on + strand, within ABCV34_RS00590 at 126.455 kb on + strand, within ABCV34_RS00590 at 126.455 kb on + strand, within ABCV34_RS00590 at 126.455 kb on + strand, within ABCV34_RS00590 at 126.455 kb on + strand, within ABCV34_RS00590 at 126.456 kb on - strand, within ABCV34_RS00590 at 126.456 kb on - strand, within ABCV34_RS00590 at 126.456 kb on - strand, within ABCV34_RS00590 at 126.456 kb on - strand, within ABCV34_RS00590 at 126.456 kb on - strand, within ABCV34_RS00590 at 126.456 kb on - strand, within ABCV34_RS00590 at 126.456 kb on - strand, within ABCV34_RS00590 at 126.543 kb on - strand at 126.574 kb on + strand at 126.574 kb on + strand at 126.574 kb on + strand at 126.574 kb on + strand at 126.574 kb on + strand at 126.574 kb on + strand at 126.574 kb on + strand at 126.575 kb on - strand at 126.575 kb on - strand at 126.575 kb on - strand at 126.605 kb on + strand at 126.606 kb on - strand at 126.606 kb on - strand at 126.692 kb on + strand at 126.692 kb on + strand at 126.692 kb on + strand at 126.693 kb on - strand at 126.693 kb on - strand at 126.693 kb on - strand at 126.693 kb on - strand at 126.693 kb on - strand at 126.693 kb on - strand at 126.693 kb on - strand at 126.696 kb on + strand at 126.697 kb on - strand at 126.697 kb on - strand at 126.697 kb on - strand at 126.697 kb on - strand at 126.697 kb on - strand at 126.848 kb on + strand, within ABCV34_RS00595 at 126.848 kb on + strand, within ABCV34_RS00595 at 126.849 kb on - strand, within ABCV34_RS00595 at 126.849 kb on - strand, within ABCV34_RS00595 at 126.899 kb on + strand, within ABCV34_RS00595 at 126.899 kb on + strand, within ABCV34_RS00595 at 126.899 kb on + strand, within ABCV34_RS00595 at 126.899 kb on + strand, within ABCV34_RS00595 at 126.899 kb on + strand, within ABCV34_RS00595 at 126.899 kb on + strand, within ABCV34_RS00595 at 126.900 kb on - strand, within ABCV34_RS00595 at 126.900 kb on - strand, within ABCV34_RS00595 at 126.900 kb on - strand, within ABCV34_RS00595 at 126.900 kb on - strand, within ABCV34_RS00595 at 126.948 kb on - strand, within ABCV34_RS00595 at 126.948 kb on - strand, within ABCV34_RS00595 at 127.256 kb on + strand, within ABCV34_RS00595 at 127.257 kb on - strand, within ABCV34_RS00595 at 127.257 kb on - strand, within ABCV34_RS00595 at 127.257 kb on - strand, within ABCV34_RS00595 at 127.257 kb on - strand, within ABCV34_RS00595 at 127.284 kb on + strand, within ABCV34_RS00595 at 127.284 kb on + strand, within ABCV34_RS00595 at 127.284 kb on + strand, within ABCV34_RS00595 at 127.284 kb on + strand, within ABCV34_RS00595 at 127.284 kb on + strand, within ABCV34_RS00595 at 127.285 kb on - strand, within ABCV34_RS00595 at 127.285 kb on - strand, within ABCV34_RS00595 at 127.285 kb on - strand, within ABCV34_RS00595 at 127.286 kb on + strand, within ABCV34_RS00595 at 127.286 kb on + strand, within ABCV34_RS00595 at 127.286 kb on + strand, within ABCV34_RS00595 at 127.287 kb on - strand, within ABCV34_RS00595 at 127.287 kb on - strand, within ABCV34_RS00595 at 127.287 kb on - strand, within ABCV34_RS00595 at 127.287 kb on - strand, within ABCV34_RS00595 at 127.287 kb on - strand, within ABCV34_RS00595 at 127.287 kb on - strand, within ABCV34_RS00595 at 127.370 kb on - strand, within ABCV34_RS00595 at 127.370 kb on - strand, within ABCV34_RS00595 at 127.565 kb on + strand, within ABCV34_RS00595 at 127.565 kb on + strand, within ABCV34_RS00595 at 127.565 kb on + strand, within ABCV34_RS00595 at 127.565 kb on + strand, within ABCV34_RS00595 at 127.565 kb on + strand, within ABCV34_RS00595 at 127.565 kb on + strand, within ABCV34_RS00595 at 127.566 kb on - strand, within ABCV34_RS00595 at 127.566 kb on - strand, within ABCV34_RS00595 at 127.566 kb on - strand, within ABCV34_RS00595 at 127.566 kb on - strand, within ABCV34_RS00595 at 127.610 kb on + strand, within ABCV34_RS00595 at 127.610 kb on + strand, within ABCV34_RS00595 at 127.610 kb on + strand, within ABCV34_RS00595 at 127.610 kb on + strand, within ABCV34_RS00595 at 127.610 kb on + strand, within ABCV34_RS00595 at 127.611 kb on - strand, within ABCV34_RS00595 at 127.611 kb on - strand, within ABCV34_RS00595 at 127.611 kb on - strand, within ABCV34_RS00595 at 127.611 kb on - strand, within ABCV34_RS00595 at 127.611 kb on - strand, within ABCV34_RS00595 at 127.652 kb on + strand at 127.652 kb on + strand at 127.653 kb on - strand at 127.664 kb on + strand at 127.664 kb on + strand at 127.665 kb on - strand at 127.825 kb on + strand at 127.825 kb on + strand at 127.826 kb on - strand at 127.999 kb on + strand, within ABCV34_RS00600 at 127.999 kb on + strand, within ABCV34_RS00600 at 128.000 kb on - strand, within ABCV34_RS00600 at 128.152 kb on + strand, within ABCV34_RS00600 at 128.152 kb on + strand, within ABCV34_RS00600 at 128.152 kb on + strand, within ABCV34_RS00600 at 128.152 kb on + strand, within ABCV34_RS00600 at 128.152 kb on + strand, within ABCV34_RS00600 at 128.153 kb on - strand, within ABCV34_RS00600 at 128.153 kb on - strand, within ABCV34_RS00600 at 128.153 kb on - strand, within ABCV34_RS00600 at 128.153 kb on - strand, within ABCV34_RS00600 at 128.153 kb on - strand, within ABCV34_RS00600 at 128.173 kb on + strand, within ABCV34_RS00600 at 128.173 kb on + strand, within ABCV34_RS00600 at 128.173 kb on + strand, within ABCV34_RS00600 at 128.173 kb on + strand, within ABCV34_RS00600 at 128.173 kb on + strand, within ABCV34_RS00600 at 128.173 kb on + strand, within ABCV34_RS00600 at 128.173 kb on + strand, within ABCV34_RS00600 at 128.173 kb on + strand, within ABCV34_RS00600 at 128.174 kb on - strand, within ABCV34_RS00600 at 128.174 kb on - strand, within ABCV34_RS00600 at 128.174 kb on - strand, within ABCV34_RS00600 at 128.174 kb on - strand, within ABCV34_RS00600 at 128.266 kb on + strand, within ABCV34_RS00600 at 128.266 kb on + strand, within ABCV34_RS00600 at 128.266 kb on + strand, within ABCV34_RS00600 at 128.267 kb on - strand, within ABCV34_RS00600 at 128.267 kb on - strand, within ABCV34_RS00600 at 128.267 kb on - strand, within ABCV34_RS00600 at 128.267 kb on - strand, within ABCV34_RS00600 at 128.267 kb on - strand, within ABCV34_RS00600 at 128.278 kb on + strand, within ABCV34_RS00600 at 128.674 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aerobic; FW104 COMM 1 X remove 125,622 - -0.9 125,622 - -1.5 125,624 + -0.4 125,624 + -1.7 125,624 + -0.5 125,624 + -1.1 125,624 + -1.5 125,624 + -1.5 125,624 + -1.5 125,624 + -2.1 125,624 + -0.7 125,625 - -1.1 125,625 - -1.3 125,625 - -0.9 125,625 - -1.0 125,635 + -0.6 125,765 + -1.2 125,766 - -1.2 125,766 - -3.9 125,812 - ABCV34_RS00590 0.12 -1.2 125,812 - ABCV34_RS00590 0.12 -1.9 125,924 + ABCV34_RS00590 0.25 -1.9 125,925 - ABCV34_RS00590 0.25 -1.0 126,098 + ABCV34_RS00590 0.44 -1.7 126,098 + ABCV34_RS00590 0.44 -1.1 126,098 + ABCV34_RS00590 0.44 -1.6 126,099 - ABCV34_RS00590 0.44 -0.8 126,099 - ABCV34_RS00590 0.44 -0.7 126,099 - ABCV34_RS00590 0.44 -1.7 126,155 + ABCV34_RS00590 0.51 -1.5 126,156 - ABCV34_RS00590 0.51 -1.1 126,156 - ABCV34_RS00590 0.51 -1.4 126,156 - ABCV34_RS00590 0.51 +1.0 126,272 + ABCV34_RS00590 0.64 -1.6 126,272 + ABCV34_RS00590 0.64 -3.2 126,272 + ABCV34_RS00590 0.64 -1.4 126,273 - ABCV34_RS00590 0.64 -1.4 126,273 - ABCV34_RS00590 0.64 -1.3 126,273 - ABCV34_RS00590 0.64 -1.9 126,273 - ABCV34_RS00590 0.64 -1.7 126,308 + ABCV34_RS00590 0.68 -0.8 126,309 - ABCV34_RS00590 0.68 -2.0 126,341 + ABCV34_RS00590 0.72 -2.1 126,341 + ABCV34_RS00590 0.72 -0.5 126,341 + ABCV34_RS00590 0.72 -2.1 126,342 - ABCV34_RS00590 0.72 -1.3 126,342 - ABCV34_RS00590 0.72 -1.6 126,440 + ABCV34_RS00590 0.83 -0.9 126,440 + ABCV34_RS00590 0.83 -1.6 126,440 + ABCV34_RS00590 0.83 -1.5 126,440 + ABCV34_RS00590 0.83 -1.1 126,441 - ABCV34_RS00590 0.83 -2.1 126,441 - ABCV34_RS00590 0.83 -0.4 126,441 - ABCV34_RS00590 0.83 -1.5 126,455 + ABCV34_RS00590 0.85 -1.2 126,455 + ABCV34_RS00590 0.85 -0.7 126,455 + ABCV34_RS00590 0.85 -1.8 126,455 + ABCV34_RS00590 0.85 -1.7 126,455 + ABCV34_RS00590 0.85 -1.3 126,455 + ABCV34_RS00590 0.85 -2.9 126,455 + ABCV34_RS00590 0.85 -2.0 126,455 + ABCV34_RS00590 0.85 -1.0 126,456 - ABCV34_RS00590 0.85 -0.4 126,456 - ABCV34_RS00590 0.85 -1.5 126,456 - ABCV34_RS00590 0.85 -1.9 126,456 - ABCV34_RS00590 0.85 -1.3 126,456 - ABCV34_RS00590 0.85 -1.6 126,456 - ABCV34_RS00590 0.85 -2.1 126,456 - ABCV34_RS00590 0.85 -1.5 126,543 - -2.0 126,574 + -1.4 126,574 + -0.3 126,574 + -2.1 126,574 + -1.3 126,574 + -1.9 126,574 + -1.8 126,574 + -1.2 126,575 - -1.2 126,575 - -1.1 126,575 - -0.2 126,605 + -2.0 126,606 - -0.7 126,606 - -0.5 126,692 + -1.4 126,692 + -2.0 126,692 + -1.9 126,693 - -1.1 126,693 - -1.3 126,693 - -2.0 126,693 - -1.0 126,693 - -0.0 126,693 - -0.0 126,693 - -0.2 126,696 + -1.2 126,697 - -1.3 126,697 - -1.1 126,697 - -1.2 126,697 - -0.9 126,697 - -1.4 126,848 + ABCV34_RS00595 0.21 -0.8 126,848 + ABCV34_RS00595 0.21 -2.3 126,849 - ABCV34_RS00595 0.21 -1.4 126,849 - ABCV34_RS00595 0.21 -1.7 126,899 + ABCV34_RS00595 0.25 -3.1 126,899 + ABCV34_RS00595 0.25 -1.7 126,899 + ABCV34_RS00595 0.25 -1.8 126,899 + ABCV34_RS00595 0.25 -0.6 126,899 + ABCV34_RS00595 0.25 -0.7 126,899 + ABCV34_RS00595 0.25 -1.4 126,900 - ABCV34_RS00595 0.26 -1.2 126,900 - ABCV34_RS00595 0.26 +0.6 126,900 - ABCV34_RS00595 0.26 -1.3 126,900 - ABCV34_RS00595 0.26 -1.2 126,948 - ABCV34_RS00595 0.30 -1.9 126,948 - ABCV34_RS00595 0.30 -1.6 127,256 + ABCV34_RS00595 0.56 -1.0 127,257 - ABCV34_RS00595 0.56 -1.3 127,257 - ABCV34_RS00595 0.56 -1.5 127,257 - ABCV34_RS00595 0.56 -1.7 127,257 - ABCV34_RS00595 0.56 -2.5 127,284 + ABCV34_RS00595 0.59 -1.6 127,284 + ABCV34_RS00595 0.59 -2.7 127,284 + ABCV34_RS00595 0.59 -1.7 127,284 + ABCV34_RS00595 0.59 -0.7 127,284 + ABCV34_RS00595 0.59 -1.1 127,285 - ABCV34_RS00595 0.59 -3.2 127,285 - ABCV34_RS00595 0.59 -2.2 127,285 - ABCV34_RS00595 0.59 -2.1 127,286 + ABCV34_RS00595 0.59 -1.8 127,286 + ABCV34_RS00595 0.59 -1.7 127,286 + ABCV34_RS00595 0.59 -0.4 127,287 - ABCV34_RS00595 0.59 -1.3 127,287 - ABCV34_RS00595 0.59 -1.2 127,287 - ABCV34_RS00595 0.59 -0.5 127,287 - ABCV34_RS00595 0.59 -0.0 127,287 - ABCV34_RS00595 0.59 -2.0 127,287 - ABCV34_RS00595 0.59 -1.8 127,370 - ABCV34_RS00595 0.66 -2.4 127,370 - ABCV34_RS00595 0.66 -2.2 127,565 + ABCV34_RS00595 0.83 -0.9 127,565 + ABCV34_RS00595 0.83 -1.4 127,565 + ABCV34_RS00595 0.83 -1.6 127,565 + ABCV34_RS00595 0.83 -2.2 127,565 + ABCV34_RS00595 0.83 -1.9 127,565 + ABCV34_RS00595 0.83 -0.8 127,566 - ABCV34_RS00595 0.83 -2.0 127,566 - ABCV34_RS00595 0.83 -1.0 127,566 - ABCV34_RS00595 0.83 -1.2 127,566 - ABCV34_RS00595 0.83 -1.6 127,610 + ABCV34_RS00595 0.87 -0.0 127,610 + ABCV34_RS00595 0.87 -1.3 127,610 + ABCV34_RS00595 0.87 -2.1 127,610 + ABCV34_RS00595 0.87 -1.0 127,610 + ABCV34_RS00595 0.87 -2.7 127,611 - ABCV34_RS00595 0.87 -1.5 127,611 - ABCV34_RS00595 0.87 -1.5 127,611 - ABCV34_RS00595 0.87 -1.8 127,611 - ABCV34_RS00595 0.87 -1.3 127,611 - ABCV34_RS00595 0.87 -2.0 127,652 + -1.1 127,652 + -1.6 127,653 - -0.5 127,664 + -1.2 127,664 + -1.9 127,665 - -1.9 127,825 + +0.1 127,825 + -2.4 127,826 - -1.5 127,999 + ABCV34_RS00600 0.21 -1.6 127,999 + ABCV34_RS00600 0.21 -1.4 128,000 - ABCV34_RS00600 0.21 -1.6 128,152 + ABCV34_RS00600 0.39 -1.1 128,152 + ABCV34_RS00600 0.39 -1.4 128,152 + ABCV34_RS00600 0.39 -1.6 128,152 + ABCV34_RS00600 0.39 -2.0 128,152 + ABCV34_RS00600 0.39 -1.6 128,153 - ABCV34_RS00600 0.39 -1.6 128,153 - ABCV34_RS00600 0.39 -0.5 128,153 - ABCV34_RS00600 0.39 -2.5 128,153 - ABCV34_RS00600 0.39 -1.4 128,153 - ABCV34_RS00600 0.39 -2.6 128,173 + ABCV34_RS00600 0.42 -2.1 128,173 + ABCV34_RS00600 0.42 -1.3 128,173 + ABCV34_RS00600 0.42 -1.6 128,173 + ABCV34_RS00600 0.42 -1.1 128,173 + ABCV34_RS00600 0.42 -1.4 128,173 + ABCV34_RS00600 0.42 -2.2 128,173 + ABCV34_RS00600 0.42 -1.7 128,173 + ABCV34_RS00600 0.42 -1.7 128,174 - ABCV34_RS00600 0.42 -2.2 128,174 - ABCV34_RS00600 0.42 -0.8 128,174 - ABCV34_RS00600 0.42 -0.7 128,174 - ABCV34_RS00600 0.42 -1.1 128,266 + ABCV34_RS00600 0.53 -2.0 128,266 + ABCV34_RS00600 0.53 -0.8 128,266 + ABCV34_RS00600 0.53 -1.1 128,267 - ABCV34_RS00600 0.53 -1.1 128,267 - ABCV34_RS00600 0.53 -1.9 128,267 - ABCV34_RS00600 0.53 -1.7 128,267 - ABCV34_RS00600 0.53 -1.6 128,267 - ABCV34_RS00600 0.53 -1.2 128,278 + ABCV34_RS00600 0.54 -2.3 128,674 - -0.5
Or see this region's nucleotide sequence