Experiment: Aerobic no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS04370 and ABCV34_RS04375 overlap by 4 nucleotides ABCV34_RS04375 and ABCV34_RS04380 overlap by 4 nucleotides ABCV34_RS04380 and ABCV34_RS04385 overlap by 4 nucleotides
ABCV34_RS04370: ABCV34_RS04370 - pilus assembly protein N-terminal domain-containing protein, at 952,941 to 954,395
_RS04370
ABCV34_RS04375: ABCV34_RS04375 - Flp pilus assembly protein CpaB, at 954,392 to 955,438
_RS04375
ABCV34_RS04380: ABCV34_RS04380 - hypothetical protein, at 955,435 to 956,202
_RS04380
ABCV34_RS04385: ABCV34_RS04385 - TadE family protein, at 956,199 to 956,972
_RS04385
Position (kb) 954
955
956 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 953.474 kb on + strand, within ABCV34_RS04370 at 953.475 kb on - strand, within ABCV34_RS04370 at 953.500 kb on + strand, within ABCV34_RS04370 at 953.500 kb on + strand, within ABCV34_RS04370 at 953.501 kb on - strand, within ABCV34_RS04370 at 953.501 kb on - strand, within ABCV34_RS04370 at 953.501 kb on - strand, within ABCV34_RS04370 at 953.638 kb on + strand, within ABCV34_RS04370 at 953.799 kb on + strand, within ABCV34_RS04370 at 954.046 kb on + strand, within ABCV34_RS04370 at 954.190 kb on - strand, within ABCV34_RS04370 at 954.282 kb on + strand at 954.368 kb on + strand at 954.368 kb on + strand at 954.368 kb on + strand at 954.369 kb on - strand at 954.369 kb on - strand at 954.383 kb on - strand at 954.666 kb on + strand, within ABCV34_RS04375 at 954.667 kb on - strand, within ABCV34_RS04375 at 954.667 kb on - strand, within ABCV34_RS04375 at 954.667 kb on - strand, within ABCV34_RS04375 at 954.864 kb on + strand, within ABCV34_RS04375 at 954.864 kb on + strand, within ABCV34_RS04375 at 954.864 kb on + strand, within ABCV34_RS04375 at 954.865 kb on - strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.981 kb on + strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 954.982 kb on - strand, within ABCV34_RS04375 at 955.151 kb on + strand, within ABCV34_RS04375 at 955.152 kb on - strand, within ABCV34_RS04375 at 955.152 kb on - strand, within ABCV34_RS04375 at 955.152 kb on - strand, within ABCV34_RS04375 at 955.507 kb on + strand at 955.508 kb on - strand at 955.664 kb on - strand, within ABCV34_RS04380
Per-strain Table
Position Strand Gene LocusTag Fraction Aerobic no stress control remove 953,474 + ABCV34_RS04370 0.37 -2.8 953,475 - ABCV34_RS04370 0.37 -1.8 953,500 + ABCV34_RS04370 0.38 -0.0 953,500 + ABCV34_RS04370 0.38 -1.0 953,501 - ABCV34_RS04370 0.38 -1.9 953,501 - ABCV34_RS04370 0.38 -2.8 953,501 - ABCV34_RS04370 0.38 -1.4 953,638 + ABCV34_RS04370 0.48 -1.5 953,799 + ABCV34_RS04370 0.59 -0.9 954,046 + ABCV34_RS04370 0.76 -1.1 954,190 - ABCV34_RS04370 0.86 -0.3 954,282 + -1.6 954,368 + -1.6 954,368 + -1.6 954,368 + -0.3 954,369 - -1.4 954,369 - -1.7 954,383 - -1.0 954,666 + ABCV34_RS04375 0.26 -2.5 954,667 - ABCV34_RS04375 0.26 -0.8 954,667 - ABCV34_RS04375 0.26 -0.8 954,667 - ABCV34_RS04375 0.26 -1.5 954,864 + ABCV34_RS04375 0.45 -0.9 954,864 + ABCV34_RS04375 0.45 -0.5 954,864 + ABCV34_RS04375 0.45 -1.4 954,865 - ABCV34_RS04375 0.45 +0.2 954,981 + ABCV34_RS04375 0.56 -0.4 954,981 + ABCV34_RS04375 0.56 -1.8 954,981 + ABCV34_RS04375 0.56 -1.0 954,981 + ABCV34_RS04375 0.56 -1.6 954,981 + ABCV34_RS04375 0.56 -0.7 954,981 + ABCV34_RS04375 0.56 -1.2 954,981 + ABCV34_RS04375 0.56 -1.5 954,981 + ABCV34_RS04375 0.56 -1.7 954,981 + ABCV34_RS04375 0.56 -3.8 954,982 - ABCV34_RS04375 0.56 -0.0 954,982 - ABCV34_RS04375 0.56 -1.7 954,982 - ABCV34_RS04375 0.56 -0.9 954,982 - ABCV34_RS04375 0.56 -1.1 954,982 - ABCV34_RS04375 0.56 -1.7 954,982 - ABCV34_RS04375 0.56 -1.6 954,982 - ABCV34_RS04375 0.56 -0.7 954,982 - ABCV34_RS04375 0.56 -1.8 954,982 - ABCV34_RS04375 0.56 -1.8 954,982 - ABCV34_RS04375 0.56 -0.9 954,982 - ABCV34_RS04375 0.56 -0.6 954,982 - ABCV34_RS04375 0.56 -0.8 954,982 - ABCV34_RS04375 0.56 -0.4 954,982 - ABCV34_RS04375 0.56 -1.8 954,982 - ABCV34_RS04375 0.56 -1.2 954,982 - ABCV34_RS04375 0.56 -0.3 955,151 + ABCV34_RS04375 0.72 +1.0 955,152 - ABCV34_RS04375 0.73 -2.3 955,152 - ABCV34_RS04375 0.73 -1.6 955,152 - ABCV34_RS04375 0.73 -1.3 955,507 + -2.7 955,508 - -2.6 955,664 - ABCV34_RS04380 0.30 -1.8
Or see this region's nucleotide sequence