Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS01620

Experiment: Aerobic no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS01615 and ABCV34_RS01620 overlap by 65 nucleotidesABCV34_RS01620 and ABCV34_RS01625 are separated by 2 nucleotidesABCV34_RS01625 and ABCV34_RS01630 are separated by 116 nucleotides ABCV34_RS01615: ABCV34_RS01615 - acyl-CoA dehydrogenase family protein, at 346,582 to 348,228 _RS01615 ABCV34_RS01620: ABCV34_RS01620 - thermonuclease family protein, at 348,164 to 348,901 _RS01620 ABCV34_RS01625: ABCV34_RS01625 - DUF1178 family protein, at 348,904 to 349,413 _RS01625 ABCV34_RS01630: ABCV34_RS01630 - elongation factor P, at 349,530 to 350,087 _RS01630 Position (kb) 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.302 kb on + strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.303 kb on - strand, within ABCV34_RS01615at 347.476 kb on + strand, within ABCV34_RS01615at 347.476 kb on + strand, within ABCV34_RS01615at 347.476 kb on + strand, within ABCV34_RS01615at 347.477 kb on - strand, within ABCV34_RS01615at 347.477 kb on - strand, within ABCV34_RS01615at 347.477 kb on - strand, within ABCV34_RS01615at 347.477 kb on - strand, within ABCV34_RS01615at 347.477 kb on - strand, within ABCV34_RS01615at 347.539 kb on - strand, within ABCV34_RS01615at 347.539 kb on - strand, within ABCV34_RS01615at 347.539 kb on - strand, within ABCV34_RS01615at 347.800 kb on + strand, within ABCV34_RS01615at 347.800 kb on + strand, within ABCV34_RS01615at 347.800 kb on + strand, within ABCV34_RS01615at 347.800 kb on + strand, within ABCV34_RS01615at 347.801 kb on - strand, within ABCV34_RS01615at 347.801 kb on - strand, within ABCV34_RS01615at 347.830 kb on + strand, within ABCV34_RS01615at 347.831 kb on - strand, within ABCV34_RS01615at 348.163 kb on + strandat 348.163 kb on + strandat 348.164 kb on - strandat 348.231 kb on + strandat 348.231 kb on + strandat 348.231 kb on + strandat 348.231 kb on + strandat 348.231 kb on + strandat 348.232 kb on - strandat 348.232 kb on - strandat 348.232 kb on - strandat 348.232 kb on - strandat 348.232 kb on - strandat 348.232 kb on - strandat 348.232 kb on - strandat 348.236 kb on + strandat 348.422 kb on + strand, within ABCV34_RS01620at 348.422 kb on + strand, within ABCV34_RS01620at 348.422 kb on + strand, within ABCV34_RS01620at 348.422 kb on + strand, within ABCV34_RS01620at 348.422 kb on + strand, within ABCV34_RS01620at 348.422 kb on + strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.423 kb on - strand, within ABCV34_RS01620at 348.630 kb on - strand, within ABCV34_RS01620at 348.645 kb on - strand, within ABCV34_RS01620at 348.655 kb on + strand, within ABCV34_RS01620at 348.655 kb on + strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.656 kb on - strand, within ABCV34_RS01620at 348.749 kb on + strand, within ABCV34_RS01620at 348.749 kb on + strand, within ABCV34_RS01620at 348.749 kb on + strand, within ABCV34_RS01620at 348.750 kb on - strand, within ABCV34_RS01620at 348.750 kb on - strand, within ABCV34_RS01620at 348.750 kb on - strand, within ABCV34_RS01620at 348.750 kb on - strand, within ABCV34_RS01620at 348.750 kb on - strand, within ABCV34_RS01620at 348.917 kb on + strandat 348.979 kb on + strand, within ABCV34_RS01625at 348.979 kb on + strand, within ABCV34_RS01625at 348.980 kb on - strand, within ABCV34_RS01625at 348.980 kb on - strand, within ABCV34_RS01625at 349.424 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aerobic no stress control
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347,302 + ABCV34_RS01615 0.44 -1.1
347,302 + ABCV34_RS01615 0.44 -0.2
347,302 + ABCV34_RS01615 0.44 -1.5
347,302 + ABCV34_RS01615 0.44 -0.3
347,302 + ABCV34_RS01615 0.44 -0.3
347,302 + ABCV34_RS01615 0.44 -1.7
347,302 + ABCV34_RS01615 0.44 -1.3
347,302 + ABCV34_RS01615 0.44 -2.0
347,302 + ABCV34_RS01615 0.44 -0.8
347,303 - ABCV34_RS01615 0.44 -1.6
347,303 - ABCV34_RS01615 0.44 -1.0
347,303 - ABCV34_RS01615 0.44 -1.1
347,303 - ABCV34_RS01615 0.44 -2.9
347,303 - ABCV34_RS01615 0.44 -1.1
347,303 - ABCV34_RS01615 0.44 -3.1
347,303 - ABCV34_RS01615 0.44 -2.7
347,303 - ABCV34_RS01615 0.44 -2.3
347,303 - ABCV34_RS01615 0.44 -1.5
347,303 - ABCV34_RS01615 0.44 -1.1
347,303 - ABCV34_RS01615 0.44 -2.6
347,303 - ABCV34_RS01615 0.44 -2.2
347,303 - ABCV34_RS01615 0.44 -1.8
347,476 + ABCV34_RS01615 0.54 -1.2
347,476 + ABCV34_RS01615 0.54 -1.0
347,476 + ABCV34_RS01615 0.54 -1.8
347,477 - ABCV34_RS01615 0.54 -1.5
347,477 - ABCV34_RS01615 0.54 -3.1
347,477 - ABCV34_RS01615 0.54 -1.8
347,477 - ABCV34_RS01615 0.54 -1.8
347,477 - ABCV34_RS01615 0.54 -1.5
347,539 - ABCV34_RS01615 0.58 -2.1
347,539 - ABCV34_RS01615 0.58 -3.2
347,539 - ABCV34_RS01615 0.58 -1.5
347,800 + ABCV34_RS01615 0.74 -2.7
347,800 + ABCV34_RS01615 0.74 -1.7
347,800 + ABCV34_RS01615 0.74 -0.2
347,800 + ABCV34_RS01615 0.74 -1.8
347,801 - ABCV34_RS01615 0.74 -2.0
347,801 - ABCV34_RS01615 0.74 -3.1
347,830 + ABCV34_RS01615 0.76 -1.8
347,831 - ABCV34_RS01615 0.76 -1.3
348,163 + -1.2
348,163 + -1.4
348,164 - -0.4
348,231 + +1.0
348,231 + -1.0
348,231 + -0.9
348,231 + -1.3
348,231 + -2.4
348,232 - -1.8
348,232 - -1.0
348,232 - -1.6
348,232 - -0.3
348,232 - -1.8
348,232 - -1.5
348,232 - -1.3
348,236 + -1.9
348,422 + ABCV34_RS01620 0.35 -2.0
348,422 + ABCV34_RS01620 0.35 -0.1
348,422 + ABCV34_RS01620 0.35 -1.3
348,422 + ABCV34_RS01620 0.35 -2.5
348,422 + ABCV34_RS01620 0.35 -0.8
348,422 + ABCV34_RS01620 0.35 -1.5
348,423 - ABCV34_RS01620 0.35 +1.0
348,423 - ABCV34_RS01620 0.35 -1.3
348,423 - ABCV34_RS01620 0.35 -2.6
348,423 - ABCV34_RS01620 0.35 -1.1
348,423 - ABCV34_RS01620 0.35 -1.2
348,423 - ABCV34_RS01620 0.35 -2.0
348,423 - ABCV34_RS01620 0.35 -1.4
348,630 - ABCV34_RS01620 0.63 -2.5
348,645 - ABCV34_RS01620 0.65 -2.3
348,655 + ABCV34_RS01620 0.67 -2.1
348,655 + ABCV34_RS01620 0.67 -2.3
348,656 - ABCV34_RS01620 0.67 -0.8
348,656 - ABCV34_RS01620 0.67 -1.7
348,656 - ABCV34_RS01620 0.67 -1.2
348,656 - ABCV34_RS01620 0.67 -1.6
348,656 - ABCV34_RS01620 0.67 -1.5
348,656 - ABCV34_RS01620 0.67 -2.8
348,656 - ABCV34_RS01620 0.67 -1.7
348,656 - ABCV34_RS01620 0.67 -0.7
348,749 + ABCV34_RS01620 0.79 -1.8
348,749 + ABCV34_RS01620 0.79 -2.3
348,749 + ABCV34_RS01620 0.79 -1.8
348,750 - ABCV34_RS01620 0.79 +0.3
348,750 - ABCV34_RS01620 0.79 -1.9
348,750 - ABCV34_RS01620 0.79 -0.3
348,750 - ABCV34_RS01620 0.79 -1.5
348,750 - ABCV34_RS01620 0.79 -0.4
348,917 + -1.4
348,979 + ABCV34_RS01625 0.15 +0.1
348,979 + ABCV34_RS01625 0.15 -1.1
348,980 - ABCV34_RS01625 0.15 +0.7
348,980 - ABCV34_RS01625 0.15 -2.1
349,424 - -0.4

Or see this region's nucleotide sequence