Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS08850

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS08840 and ECOLIN_RS08845 are separated by 205 nucleotidesECOLIN_RS08845 and ECOLIN_RS08850 are separated by 134 nucleotidesECOLIN_RS08850 and ECOLIN_RS08855 are separated by 34 nucleotidesECOLIN_RS08855 and ECOLIN_RS08860 are separated by 2 nucleotides ECOLIN_RS08840: ECOLIN_RS08840 - starvation-sensing protein RspA, at 1,742,691 to 1,743,905 _RS08840 ECOLIN_RS08845: ECOLIN_RS08845 - YnfA family protein, at 1,744,111 to 1,744,437 _RS08845 ECOLIN_RS08850: ECOLIN_RS08850 - DUF1283 family protein, at 1,744,572 to 1,744,913 _RS08850 ECOLIN_RS08855: ECOLIN_RS08855 - spermidine N1-acetyltransferase, at 1,744,948 to 1,745,508 _RS08855 ECOLIN_RS08860: ECOLIN_RS08860 - YnfC family lipoprotein, at 1,745,511 to 1,746,221 _RS08860 Position (kb) 1744 1745Strain fitness (log2 ratio) -3 -2 -1 0 1at 1744.420 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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1,744,420 + -3.2

Or see this region's nucleotide sequence