Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS30640 and ECOLIN_RS08550 are separated by 24 nucleotides ECOLIN_RS08550 and ECOLIN_RS08555 are separated by 377 nucleotides ECOLIN_RS08555 and ECOLIN_RS08560 are separated by 130 nucleotides
ECOLIN_RS30640: ECOLIN_RS30640 - oxygen-sensing cyclic-di-GMP phosphodiesterase DosP, at 1,678,265 to 1,680,666
_RS30640
ECOLIN_RS08550: ECOLIN_RS08550 - diguanylate cyclase, at 1,680,691 to 1,680,855
_RS08550
ECOLIN_RS08555: ECOLIN_RS08555 - glycoside hydrolase family 10 protein, at 1,681,233 to 1,682,552
_RS08555
ECOLIN_RS08560: ECOLIN_RS08560 - acid resistance gamma-aminobutyrate antiporter GadC, at 1,682,683 to 1,684,218
_RS08560
Position (kb) 1681
1682
1683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1680.745 kb on - strand, within ECOLIN_RS08550 at 1681.444 kb on + strand, within ECOLIN_RS08555 at 1681.445 kb on - strand, within ECOLIN_RS08555 at 1681.706 kb on + strand, within ECOLIN_RS08555 at 1682.828 kb on + strand at 1682.851 kb on + strand, within ECOLIN_RS08560 at 1683.507 kb on + strand, within ECOLIN_RS08560
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 1,680,745 - ECOLIN_RS08550 0.33 -0.1 1,681,444 + ECOLIN_RS08555 0.16 -1.4 1,681,445 - ECOLIN_RS08555 0.16 +1.8 1,681,706 + ECOLIN_RS08555 0.36 +0.9 1,682,828 + -3.4 1,682,851 + ECOLIN_RS08560 0.11 -0.8 1,683,507 + ECOLIN_RS08560 0.54 +0.5
Or see this region's nucleotide sequence