Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS10590

Experiment: Anaerobic; Cadmium acetate 1 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABCV34_RS10580 and ABCV34_RS10585 overlap by 14 nucleotidesABCV34_RS10585 and ABCV34_RS10590 are separated by 13 nucleotidesABCV34_RS10590 and ABCV34_RS10595 are separated by 168 nucleotidesABCV34_RS10595 and ABCV34_RS10600 are separated by 12 nucleotides ABCV34_RS10580: ABCV34_RS10580 - iron-sulfur cluster insertion protein ErpA, at 2,257,146 to 2,257,511 _RS10580 ABCV34_RS10585: ABCV34_RS10585 - DUF6776 family protein, at 2,257,498 to 2,258,235 _RS10585 ABCV34_RS10590: ABCV34_RS10590 - N-acetyl-gamma-glutamyl-phosphate reductase, at 2,258,249 to 2,259,307 _RS10590 ABCV34_RS10595: ABCV34_RS10595 - 30S ribosomal protein S9, at 2,259,476 to 2,259,868 _RS10595 ABCV34_RS10600: ABCV34_RS10600 - 50S ribosomal protein L13, at 2,259,881 to 2,260,309 _RS10600 Position (kb) 2258 2259 2260Strain fitness (log2 ratio) -2 -1 0 1at 2257.259 kb on - strand, within ABCV34_RS10580at 2257.514 kb on + strandat 2257.515 kb on - strandat 2257.515 kb on - strandat 2257.515 kb on - strandat 2257.926 kb on - strand, within ABCV34_RS10585at 2257.926 kb on - strand, within ABCV34_RS10585at 2259.376 kb on + strandat 2259.376 kb on + strandat 2259.377 kb on - strandat 2259.377 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic; Cadmium acetate 1 uM
remove
2,257,259 - ABCV34_RS10580 0.31 -2.7
2,257,514 + -1.1
2,257,515 - -1.9
2,257,515 - -0.9
2,257,515 - -1.2
2,257,926 - ABCV34_RS10585 0.58 -2.3
2,257,926 - ABCV34_RS10585 0.58 -1.7
2,259,376 + -2.0
2,259,376 + -1.7
2,259,377 - -1.7
2,259,377 - -1.5

Or see this region's nucleotide sequence