Experiment: Anaerobic; Cadmium acetate 1 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS10580 and ABCV34_RS10585 overlap by 14 nucleotides ABCV34_RS10585 and ABCV34_RS10590 are separated by 13 nucleotides ABCV34_RS10590 and ABCV34_RS10595 are separated by 168 nucleotides ABCV34_RS10595 and ABCV34_RS10600 are separated by 12 nucleotides
ABCV34_RS10580: ABCV34_RS10580 - iron-sulfur cluster insertion protein ErpA, at 2,257,146 to 2,257,511
_RS10580
ABCV34_RS10585: ABCV34_RS10585 - DUF6776 family protein, at 2,257,498 to 2,258,235
_RS10585
ABCV34_RS10590: ABCV34_RS10590 - N-acetyl-gamma-glutamyl-phosphate reductase, at 2,258,249 to 2,259,307
_RS10590
ABCV34_RS10595: ABCV34_RS10595 - 30S ribosomal protein S9, at 2,259,476 to 2,259,868
_RS10595
ABCV34_RS10600: ABCV34_RS10600 - 50S ribosomal protein L13, at 2,259,881 to 2,260,309
_RS10600
Position (kb)
2258
2259
2260 Strain fitness (log2 ratio)
-2
-1
0
1 at 2257.259 kb on - strand, within ABCV34_RS10580 at 2257.514 kb on + strand at 2257.515 kb on - strand at 2257.515 kb on - strand at 2257.515 kb on - strand at 2257.926 kb on - strand, within ABCV34_RS10585 at 2257.926 kb on - strand, within ABCV34_RS10585 at 2259.376 kb on + strand at 2259.376 kb on + strand at 2259.377 kb on - strand at 2259.377 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic; Cadmium acetate 1 uM remove 2,257,259 - ABCV34_RS10580 0.31 -2.7 2,257,514 + -1.1 2,257,515 - -1.9 2,257,515 - -0.9 2,257,515 - -1.2 2,257,926 - ABCV34_RS10585 0.58 -2.3 2,257,926 - ABCV34_RS10585 0.58 -1.7 2,259,376 + -2.0 2,259,376 + -1.7 2,259,377 - -1.7 2,259,377 - -1.5
Or see this region's nucleotide sequence