Experiment: Anaerobic; Cadmium acetate 1 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02155 and ABCV34_RS02160 are separated by 4 nucleotides ABCV34_RS02160 and ABCV34_RS02165 are separated by 159 nucleotides ABCV34_RS02165 and ABCV34_RS02170 are separated by 255 nucleotides
ABCV34_RS02155: ABCV34_RS02155 - catalase, at 484,081 to 485,517
_RS02155
ABCV34_RS02160: ABCV34_RS02160 - YqiA/YcfP family alpha/beta fold hydrolase, at 485,522 to 486,088
_RS02160
ABCV34_RS02165: ABCV34_RS02165 - GNAT family N-acetyltransferase, at 486,248 to 486,562
_RS02165
ABCV34_RS02170: ABCV34_RS02170 - ATP-binding cassette domain-containing protein, at 486,818 to 487,585
_RS02170
Position (kb) 485
486
487 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 484.808 kb on - strand, within ABCV34_RS02155 at 484.808 kb on - strand, within ABCV34_RS02155 at 484.808 kb on - strand, within ABCV34_RS02155 at 484.885 kb on + strand, within ABCV34_RS02155 at 484.885 kb on + strand, within ABCV34_RS02155 at 485.164 kb on + strand, within ABCV34_RS02155 at 485.164 kb on + strand, within ABCV34_RS02155 at 485.164 kb on + strand, within ABCV34_RS02155 at 485.165 kb on - strand, within ABCV34_RS02155 at 485.326 kb on + strand, within ABCV34_RS02155 at 485.326 kb on + strand, within ABCV34_RS02155 at 485.327 kb on - strand, within ABCV34_RS02155 at 485.395 kb on - strand at 485.487 kb on - strand at 485.531 kb on + strand at 485.531 kb on + strand at 485.735 kb on + strand, within ABCV34_RS02160 at 485.735 kb on + strand, within ABCV34_RS02160 at 485.735 kb on + strand, within ABCV34_RS02160 at 485.736 kb on - strand, within ABCV34_RS02160 at 485.736 kb on - strand, within ABCV34_RS02160 at 485.836 kb on + strand, within ABCV34_RS02160 at 485.836 kb on + strand, within ABCV34_RS02160 at 485.836 kb on + strand, within ABCV34_RS02160 at 485.836 kb on + strand, within ABCV34_RS02160 at 485.836 kb on + strand, within ABCV34_RS02160 at 485.836 kb on + strand, within ABCV34_RS02160 at 485.837 kb on - strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.876 kb on + strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 485.877 kb on - strand, within ABCV34_RS02160 at 486.278 kb on + strand at 486.278 kb on + strand at 486.279 kb on - strand at 486.387 kb on + strand, within ABCV34_RS02165 at 486.387 kb on + strand, within ABCV34_RS02165 at 486.470 kb on + strand, within ABCV34_RS02165 at 486.470 kb on + strand, within ABCV34_RS02165 at 486.471 kb on - strand, within ABCV34_RS02165 at 486.542 kb on + strand at 486.543 kb on - strand at 486.577 kb on + strand at 486.616 kb on - strand at 486.616 kb on - strand at 486.697 kb on + strand at 486.697 kb on + strand at 486.697 kb on + strand at 486.697 kb on + strand at 486.698 kb on - strand at 486.698 kb on - strand at 486.698 kb on - strand at 486.698 kb on - strand at 486.819 kb on + strand at 486.820 kb on - strand at 486.820 kb on - strand at 486.820 kb on - strand at 486.820 kb on - strand at 486.820 kb on - strand at 486.877 kb on + strand at 486.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic; Cadmium acetate 1 uM remove 484,808 - ABCV34_RS02155 0.51 -1.2 484,808 - ABCV34_RS02155 0.51 -2.5 484,808 - ABCV34_RS02155 0.51 +0.1 484,885 + ABCV34_RS02155 0.56 -2.1 484,885 + ABCV34_RS02155 0.56 -2.8 485,164 + ABCV34_RS02155 0.75 -1.3 485,164 + ABCV34_RS02155 0.75 -0.9 485,164 + ABCV34_RS02155 0.75 -1.1 485,165 - ABCV34_RS02155 0.75 -2.1 485,326 + ABCV34_RS02155 0.87 -1.4 485,326 + ABCV34_RS02155 0.87 +1.7 485,327 - ABCV34_RS02155 0.87 -1.8 485,395 - -1.5 485,487 - +1.1 485,531 + -1.7 485,531 + -0.5 485,735 + ABCV34_RS02160 0.38 -2.0 485,735 + ABCV34_RS02160 0.38 -1.6 485,735 + ABCV34_RS02160 0.38 -1.0 485,736 - ABCV34_RS02160 0.38 -1.7 485,736 - ABCV34_RS02160 0.38 +0.7 485,836 + ABCV34_RS02160 0.55 -2.5 485,836 + ABCV34_RS02160 0.55 -1.3 485,836 + ABCV34_RS02160 0.55 -0.9 485,836 + ABCV34_RS02160 0.55 -1.6 485,836 + ABCV34_RS02160 0.55 -2.6 485,836 + ABCV34_RS02160 0.55 -1.1 485,837 - ABCV34_RS02160 0.56 -1.7 485,876 + ABCV34_RS02160 0.62 -3.2 485,876 + ABCV34_RS02160 0.62 -1.5 485,876 + ABCV34_RS02160 0.62 -1.8 485,876 + ABCV34_RS02160 0.62 -2.5 485,876 + ABCV34_RS02160 0.62 -0.4 485,876 + ABCV34_RS02160 0.62 -1.7 485,876 + ABCV34_RS02160 0.62 -1.9 485,876 + ABCV34_RS02160 0.62 -3.1 485,877 - ABCV34_RS02160 0.63 -1.9 485,877 - ABCV34_RS02160 0.63 -2.0 485,877 - ABCV34_RS02160 0.63 -1.2 485,877 - ABCV34_RS02160 0.63 -1.9 485,877 - ABCV34_RS02160 0.63 -1.3 485,877 - ABCV34_RS02160 0.63 -4.3 485,877 - ABCV34_RS02160 0.63 -2.0 485,877 - ABCV34_RS02160 0.63 -2.5 485,877 - ABCV34_RS02160 0.63 -1.5 485,877 - ABCV34_RS02160 0.63 -0.9 486,278 + -1.5 486,278 + -1.4 486,279 - -1.7 486,387 + ABCV34_RS02165 0.44 +0.1 486,387 + ABCV34_RS02165 0.44 -0.9 486,470 + ABCV34_RS02165 0.70 -0.4 486,470 + ABCV34_RS02165 0.70 -1.8 486,471 - ABCV34_RS02165 0.71 -2.6 486,542 + -1.6 486,543 - -1.2 486,577 + -1.5 486,616 - -1.9 486,616 - -1.7 486,697 + -2.2 486,697 + -1.5 486,697 + -2.4 486,697 + -1.5 486,698 - -1.1 486,698 - -2.0 486,698 - -1.9 486,698 - -1.0 486,819 + -1.5 486,820 - -1.5 486,820 - -1.9 486,820 - -1.1 486,820 - -1.6 486,820 - -1.9 486,877 + -1.5 486,878 - -2.8
Or see this region's nucleotide sequence