Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS30640

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS08535 and ECOLIN_RS08540 are separated by 344 nucleotidesECOLIN_RS08540 and ECOLIN_RS30640 are separated by 188 nucleotidesECOLIN_RS30640 and ECOLIN_RS08550 are separated by 24 nucleotidesECOLIN_RS08550 and ECOLIN_RS08555 are separated by 377 nucleotides ECOLIN_RS08535: ECOLIN_RS08535 - biofilm-dependent modulation protein, at 1,677,085 to 1,677,300 _RS08535 ECOLIN_RS08540: ECOLIN_RS08540 - peroxiredoxin OsmC, at 1,677,645 to 1,678,076 _RS08540 ECOLIN_RS30640: ECOLIN_RS30640 - oxygen-sensing cyclic-di-GMP phosphodiesterase DosP, at 1,678,265 to 1,680,666 _RS30640 ECOLIN_RS08550: ECOLIN_RS08550 - diguanylate cyclase, at 1,680,691 to 1,680,855 _RS08550 ECOLIN_RS08555: ECOLIN_RS08555 - glycoside hydrolase family 10 protein, at 1,681,233 to 1,682,552 _RS08555 Position (kb) 1678 1679 1680 1681Strain fitness (log2 ratio) -1 0 1at 1680.745 kb on - strand, within ECOLIN_RS08550at 1681.444 kb on + strand, within ECOLIN_RS08555at 1681.445 kb on - strand, within ECOLIN_RS08555

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,680,745 - ECOLIN_RS08550 0.33 +1.5
1,681,444 + ECOLIN_RS08555 0.16 +0.2
1,681,445 - ECOLIN_RS08555 0.16 +0.9

Or see this region's nucleotide sequence