Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS22600

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECOLIN_RS22585 and ECOLIN_RS22590 are separated by 211 nucleotidesECOLIN_RS22590 and ECOLIN_RS22595 are separated by 26 nucleotidesECOLIN_RS22595 and ECOLIN_RS22600 are separated by 4 nucleotidesECOLIN_RS22600 and ECOLIN_RS22605 are separated by 96 nucleotides ECOLIN_RS22585: ECOLIN_RS22585 - DUF805 domain-containing protein, at 4,535,112 to 4,535,552 _RS22585 ECOLIN_RS22590: ECOLIN_RS22590 - DUF406 domain-containing protein, at 4,535,764 to 4,536,063 _RS22590 ECOLIN_RS22595: ECOLIN_RS22595 - universal stress protein UspD, at 4,536,090 to 4,536,518 _RS22595 ECOLIN_RS22600: ECOLIN_RS22600 - ferredoxin--NADP(+) reductase, at 4,536,523 to 4,537,269 _RS22600 ECOLIN_RS22605: ECOLIN_RS22605 - class II fructose-bisphosphatase, at 4,537,366 to 4,538,376 _RS22605 Position (kb) 4536 4537 4538Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4535.687 kb on - strandat 4535.716 kb on + strandat 4535.716 kb on + strandat 4535.717 kb on - strandat 4535.781 kb on + strandat 4535.781 kb on + strandat 4535.847 kb on + strand, within ECOLIN_RS22590at 4535.848 kb on - strand, within ECOLIN_RS22590at 4535.958 kb on + strand, within ECOLIN_RS22590at 4535.958 kb on + strand, within ECOLIN_RS22590at 4536.030 kb on + strand, within ECOLIN_RS22590at 4536.031 kb on - strand, within ECOLIN_RS22590at 4536.075 kb on + strandat 4536.096 kb on + strandat 4536.241 kb on - strand, within ECOLIN_RS22595at 4536.261 kb on - strand, within ECOLIN_RS22595at 4536.435 kb on - strand, within ECOLIN_RS22595at 4536.565 kb on + strandat 4536.565 kb on + strandat 4536.565 kb on + strandat 4536.814 kb on + strand, within ECOLIN_RS22600at 4536.815 kb on - strand, within ECOLIN_RS22600at 4536.818 kb on + strand, within ECOLIN_RS22600at 4536.818 kb on + strand, within ECOLIN_RS22600at 4536.819 kb on - strand, within ECOLIN_RS22600at 4536.823 kb on + strand, within ECOLIN_RS22600at 4536.837 kb on - strand, within ECOLIN_RS22600at 4536.908 kb on + strand, within ECOLIN_RS22600at 4536.908 kb on + strand, within ECOLIN_RS22600at 4536.908 kb on + strand, within ECOLIN_RS22600at 4536.909 kb on - strand, within ECOLIN_RS22600at 4536.909 kb on - strand, within ECOLIN_RS22600at 4537.045 kb on + strand, within ECOLIN_RS22600at 4537.045 kb on + strand, within ECOLIN_RS22600at 4537.046 kb on - strand, within ECOLIN_RS22600at 4537.046 kb on - strand, within ECOLIN_RS22600at 4537.110 kb on - strand, within ECOLIN_RS22600at 4537.110 kb on - strand, within ECOLIN_RS22600at 4537.497 kb on + strand, within ECOLIN_RS22605at 4537.579 kb on + strand, within ECOLIN_RS22605at 4537.579 kb on + strand, within ECOLIN_RS22605at 4537.580 kb on - strand, within ECOLIN_RS22605at 4537.705 kb on + strand, within ECOLIN_RS22605at 4537.706 kb on - strand, within ECOLIN_RS22605at 4537.706 kb on - strand, within ECOLIN_RS22605at 4537.706 kb on - strand, within ECOLIN_RS22605at 4537.765 kb on + strand, within ECOLIN_RS22605at 4537.766 kb on - strand, within ECOLIN_RS22605at 4537.788 kb on + strand, within ECOLIN_RS22605at 4537.789 kb on - strand, within ECOLIN_RS22605at 4537.834 kb on + strand, within ECOLIN_RS22605at 4537.834 kb on + strand, within ECOLIN_RS22605at 4538.021 kb on + strand, within ECOLIN_RS22605at 4538.021 kb on + strand, within ECOLIN_RS22605at 4538.021 kb on + strand, within ECOLIN_RS22605at 4538.021 kb on + strand, within ECOLIN_RS22605at 4538.022 kb on - strand, within ECOLIN_RS22605at 4538.022 kb on - strand, within ECOLIN_RS22605at 4538.022 kb on - strand, within ECOLIN_RS22605at 4538.022 kb on - strand, within ECOLIN_RS22605at 4538.022 kb on - strand, within ECOLIN_RS22605at 4538.022 kb on - strand, within ECOLIN_RS22605at 4538.022 kb on - strand, within ECOLIN_RS22605at 4538.022 kb on - strand, within ECOLIN_RS22605at 4538.022 kb on - strand, within ECOLIN_RS22605at 4538.022 kb on - strand, within ECOLIN_RS22605at 4538.026 kb on - strand, within ECOLIN_RS22605at 4538.060 kb on - strand, within ECOLIN_RS22605at 4538.138 kb on - strand, within ECOLIN_RS22605at 4538.177 kb on + strand, within ECOLIN_RS22605at 4538.177 kb on + strand, within ECOLIN_RS22605at 4538.178 kb on - strand, within ECOLIN_RS22605at 4538.250 kb on + strand, within ECOLIN_RS22605at 4538.254 kb on - strand, within ECOLIN_RS22605

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,535,687 - -0.3
4,535,716 + +0.1
4,535,716 + +0.4
4,535,717 - +0.0
4,535,781 + -0.3
4,535,781 + +3.3
4,535,847 + ECOLIN_RS22590 0.28 +0.1
4,535,848 - ECOLIN_RS22590 0.28 -0.2
4,535,958 + ECOLIN_RS22590 0.65 -0.1
4,535,958 + ECOLIN_RS22590 0.65 -0.4
4,536,030 + ECOLIN_RS22590 0.89 +0.1
4,536,031 - ECOLIN_RS22590 0.89 -0.9
4,536,075 + -0.1
4,536,096 + -0.2
4,536,241 - ECOLIN_RS22595 0.35 +0.3
4,536,261 - ECOLIN_RS22595 0.40 -1.0
4,536,435 - ECOLIN_RS22595 0.80 +0.2
4,536,565 + +1.9
4,536,565 + +0.9
4,536,565 + +0.3
4,536,814 + ECOLIN_RS22600 0.39 +0.1
4,536,815 - ECOLIN_RS22600 0.39 +0.4
4,536,818 + ECOLIN_RS22600 0.39 +0.1
4,536,818 + ECOLIN_RS22600 0.39 -0.0
4,536,819 - ECOLIN_RS22600 0.40 +0.1
4,536,823 + ECOLIN_RS22600 0.40 -0.8
4,536,837 - ECOLIN_RS22600 0.42 -0.1
4,536,908 + ECOLIN_RS22600 0.52 -0.1
4,536,908 + ECOLIN_RS22600 0.52 +0.6
4,536,908 + ECOLIN_RS22600 0.52 +0.7
4,536,909 - ECOLIN_RS22600 0.52 +0.2
4,536,909 - ECOLIN_RS22600 0.52 +0.3
4,537,045 + ECOLIN_RS22600 0.70 +0.7
4,537,045 + ECOLIN_RS22600 0.70 +0.4
4,537,046 - ECOLIN_RS22600 0.70 +0.5
4,537,046 - ECOLIN_RS22600 0.70 +0.5
4,537,110 - ECOLIN_RS22600 0.79 +0.4
4,537,110 - ECOLIN_RS22600 0.79 +0.6
4,537,497 + ECOLIN_RS22605 0.13 -0.3
4,537,579 + ECOLIN_RS22605 0.21 +0.7
4,537,579 + ECOLIN_RS22605 0.21 -0.6
4,537,580 - ECOLIN_RS22605 0.21 -0.0
4,537,705 + ECOLIN_RS22605 0.34 +0.7
4,537,706 - ECOLIN_RS22605 0.34 -1.2
4,537,706 - ECOLIN_RS22605 0.34 -0.4
4,537,706 - ECOLIN_RS22605 0.34 +0.4
4,537,765 + ECOLIN_RS22605 0.39 +0.4
4,537,766 - ECOLIN_RS22605 0.40 -0.1
4,537,788 + ECOLIN_RS22605 0.42 +0.4
4,537,789 - ECOLIN_RS22605 0.42 -0.1
4,537,834 + ECOLIN_RS22605 0.46 -0.0
4,537,834 + ECOLIN_RS22605 0.46 +0.4
4,538,021 + ECOLIN_RS22605 0.65 -0.1
4,538,021 + ECOLIN_RS22605 0.65 +0.7
4,538,021 + ECOLIN_RS22605 0.65 +0.3
4,538,021 + ECOLIN_RS22605 0.65 -0.1
4,538,022 - ECOLIN_RS22605 0.65 +0.4
4,538,022 - ECOLIN_RS22605 0.65 -0.2
4,538,022 - ECOLIN_RS22605 0.65 -0.1
4,538,022 - ECOLIN_RS22605 0.65 -0.6
4,538,022 - ECOLIN_RS22605 0.65 +0.4
4,538,022 - ECOLIN_RS22605 0.65 +0.1
4,538,022 - ECOLIN_RS22605 0.65 -0.1
4,538,022 - ECOLIN_RS22605 0.65 -0.4
4,538,022 - ECOLIN_RS22605 0.65 -0.1
4,538,022 - ECOLIN_RS22605 0.65 +0.4
4,538,026 - ECOLIN_RS22605 0.65 +0.3
4,538,060 - ECOLIN_RS22605 0.69 -0.3
4,538,138 - ECOLIN_RS22605 0.76 -2.4
4,538,177 + ECOLIN_RS22605 0.80 +0.8
4,538,177 + ECOLIN_RS22605 0.80 +0.4
4,538,178 - ECOLIN_RS22605 0.80 +0.1
4,538,250 + ECOLIN_RS22605 0.87 +0.5
4,538,254 - ECOLIN_RS22605 0.88 +0.2

Or see this region's nucleotide sequence