Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS22580 and ECOLIN_RS22585 are separated by 100 nucleotides ECOLIN_RS22585 and ECOLIN_RS22590 are separated by 211 nucleotides ECOLIN_RS22590 and ECOLIN_RS22595 are separated by 26 nucleotides ECOLIN_RS22595 and ECOLIN_RS22600 are separated by 4 nucleotides
ECOLIN_RS22580: ECOLIN_RS22580 - DUF1454 family protein, at 4,534,412 to 4,535,011
_RS22580
ECOLIN_RS22585: ECOLIN_RS22585 - DUF805 domain-containing protein, at 4,535,112 to 4,535,552
_RS22585
ECOLIN_RS22590: ECOLIN_RS22590 - DUF406 domain-containing protein, at 4,535,764 to 4,536,063
_RS22590
ECOLIN_RS22595: ECOLIN_RS22595 - universal stress protein UspD, at 4,536,090 to 4,536,518
_RS22595
ECOLIN_RS22600: ECOLIN_RS22600 - ferredoxin--NADP(+) reductase, at 4,536,523 to 4,537,269
_RS22600
Position (kb) 4535
4536
4537 Strain fitness (log2 ratio) -1
0
1
2
3 at 4534.979 kb on + strand at 4534.980 kb on - strand at 4534.980 kb on - strand at 4534.980 kb on - strand at 4535.044 kb on + strand at 4535.109 kb on + strand at 4535.109 kb on + strand at 4535.109 kb on + strand at 4535.109 kb on + strand at 4535.109 kb on + strand at 4535.110 kb on - strand at 4535.110 kb on - strand at 4535.110 kb on - strand at 4535.142 kb on - strand at 4535.687 kb on - strand at 4535.716 kb on + strand at 4535.716 kb on + strand at 4535.717 kb on - strand at 4535.781 kb on + strand at 4535.781 kb on + strand at 4535.847 kb on + strand, within ECOLIN_RS22590 at 4535.848 kb on - strand, within ECOLIN_RS22590 at 4535.958 kb on + strand, within ECOLIN_RS22590 at 4535.958 kb on + strand, within ECOLIN_RS22590 at 4536.030 kb on + strand, within ECOLIN_RS22590 at 4536.031 kb on - strand, within ECOLIN_RS22590 at 4536.075 kb on + strand at 4536.096 kb on + strand at 4536.241 kb on - strand, within ECOLIN_RS22595 at 4536.261 kb on - strand, within ECOLIN_RS22595 at 4536.435 kb on - strand, within ECOLIN_RS22595 at 4536.565 kb on + strand at 4536.565 kb on + strand at 4536.565 kb on + strand at 4536.814 kb on + strand, within ECOLIN_RS22600 at 4536.815 kb on - strand, within ECOLIN_RS22600 at 4536.818 kb on + strand, within ECOLIN_RS22600 at 4536.818 kb on + strand, within ECOLIN_RS22600 at 4536.819 kb on - strand, within ECOLIN_RS22600 at 4536.823 kb on + strand, within ECOLIN_RS22600 at 4536.837 kb on - strand, within ECOLIN_RS22600 at 4536.908 kb on + strand, within ECOLIN_RS22600 at 4536.908 kb on + strand, within ECOLIN_RS22600 at 4536.908 kb on + strand, within ECOLIN_RS22600 at 4536.909 kb on - strand, within ECOLIN_RS22600 at 4536.909 kb on - strand, within ECOLIN_RS22600 at 4537.045 kb on + strand, within ECOLIN_RS22600 at 4537.045 kb on + strand, within ECOLIN_RS22600 at 4537.046 kb on - strand, within ECOLIN_RS22600 at 4537.046 kb on - strand, within ECOLIN_RS22600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,534,979 + +0.2 4,534,980 - +0.2 4,534,980 - +0.7 4,534,980 - +0.4 4,535,044 + -0.2 4,535,109 + +0.8 4,535,109 + +0.1 4,535,109 + -0.1 4,535,109 + -0.2 4,535,109 + -0.5 4,535,110 - -1.2 4,535,110 - +0.1 4,535,110 - +0.2 4,535,142 - -0.4 4,535,687 - -0.3 4,535,716 + +0.1 4,535,716 + +0.4 4,535,717 - +0.0 4,535,781 + -0.3 4,535,781 + +3.3 4,535,847 + ECOLIN_RS22590 0.28 +0.1 4,535,848 - ECOLIN_RS22590 0.28 -0.2 4,535,958 + ECOLIN_RS22590 0.65 -0.1 4,535,958 + ECOLIN_RS22590 0.65 -0.4 4,536,030 + ECOLIN_RS22590 0.89 +0.1 4,536,031 - ECOLIN_RS22590 0.89 -0.9 4,536,075 + -0.1 4,536,096 + -0.2 4,536,241 - ECOLIN_RS22595 0.35 +0.3 4,536,261 - ECOLIN_RS22595 0.40 -1.0 4,536,435 - ECOLIN_RS22595 0.80 +0.2 4,536,565 + +1.9 4,536,565 + +0.9 4,536,565 + +0.3 4,536,814 + ECOLIN_RS22600 0.39 +0.1 4,536,815 - ECOLIN_RS22600 0.39 +0.4 4,536,818 + ECOLIN_RS22600 0.39 +0.1 4,536,818 + ECOLIN_RS22600 0.39 -0.0 4,536,819 - ECOLIN_RS22600 0.40 +0.1 4,536,823 + ECOLIN_RS22600 0.40 -0.8 4,536,837 - ECOLIN_RS22600 0.42 -0.1 4,536,908 + ECOLIN_RS22600 0.52 -0.1 4,536,908 + ECOLIN_RS22600 0.52 +0.6 4,536,908 + ECOLIN_RS22600 0.52 +0.7 4,536,909 - ECOLIN_RS22600 0.52 +0.2 4,536,909 - ECOLIN_RS22600 0.52 +0.3 4,537,045 + ECOLIN_RS22600 0.70 +0.7 4,537,045 + ECOLIN_RS22600 0.70 +0.4 4,537,046 - ECOLIN_RS22600 0.70 +0.5 4,537,046 - ECOLIN_RS22600 0.70 +0.5
Or see this region's nucleotide sequence