Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS22090 and ECOLIN_RS22095 are separated by 24 nucleotides ECOLIN_RS22095 and ECOLIN_RS22100 overlap by 11 nucleotides ECOLIN_RS22100 and ECOLIN_RS22105 are separated by 23 nucleotides
ECOLIN_RS22090: ECOLIN_RS22090 - tripartite tricarboxylate transporter substrate binding protein, at 4,437,521 to 4,438,495
_RS22090
ECOLIN_RS22095: ECOLIN_RS22095 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 4,438,520 to 4,439,149
_RS22095
ECOLIN_RS22100: ECOLIN_RS22100 - 2-dehydro-3-deoxygalactonokinase, at 4,439,139 to 4,440,143
_RS22100
ECOLIN_RS22105: ECOLIN_RS22105 - IclR family transcriptional regulator, at 4,440,167 to 4,440,934
_RS22105
Position (kb) 4439
4440
4441 Strain fitness (log2 ratio) -1
0
1 at 4438.142 kb on - strand, within ECOLIN_RS22090 at 4438.157 kb on - strand, within ECOLIN_RS22090 at 4438.157 kb on - strand, within ECOLIN_RS22090 at 4438.279 kb on + strand, within ECOLIN_RS22090 at 4438.279 kb on + strand, within ECOLIN_RS22090 at 4438.304 kb on + strand, within ECOLIN_RS22090 at 4438.304 kb on + strand, within ECOLIN_RS22090 at 4438.379 kb on + strand, within ECOLIN_RS22090 at 4438.416 kb on - strand at 4438.452 kb on - strand at 4438.480 kb on + strand at 4438.480 kb on + strand at 4438.480 kb on + strand at 4438.605 kb on - strand, within ECOLIN_RS22095 at 4438.742 kb on - strand, within ECOLIN_RS22095 at 4438.774 kb on + strand, within ECOLIN_RS22095 at 4438.833 kb on + strand, within ECOLIN_RS22095 at 4438.833 kb on + strand, within ECOLIN_RS22095 at 4438.834 kb on - strand, within ECOLIN_RS22095 at 4438.837 kb on + strand, within ECOLIN_RS22095 at 4438.892 kb on - strand, within ECOLIN_RS22095 at 4438.990 kb on + strand, within ECOLIN_RS22095 at 4438.990 kb on + strand, within ECOLIN_RS22095 at 4438.990 kb on + strand, within ECOLIN_RS22095 at 4438.997 kb on - strand, within ECOLIN_RS22095 at 4438.997 kb on - strand, within ECOLIN_RS22095 at 4439.023 kb on + strand, within ECOLIN_RS22095 at 4439.137 kb on + strand at 4439.138 kb on - strand at 4439.138 kb on - strand at 4439.141 kb on - strand at 4439.153 kb on + strand at 4439.154 kb on - strand at 4439.154 kb on - strand at 4439.154 kb on - strand at 4439.205 kb on + strand at 4439.239 kb on - strand at 4439.239 kb on - strand at 4439.239 kb on - strand at 4439.364 kb on + strand, within ECOLIN_RS22100 at 4439.364 kb on + strand, within ECOLIN_RS22100 at 4439.364 kb on + strand, within ECOLIN_RS22100 at 4439.365 kb on - strand, within ECOLIN_RS22100 at 4439.365 kb on - strand, within ECOLIN_RS22100 at 4439.395 kb on + strand, within ECOLIN_RS22100 at 4439.417 kb on + strand, within ECOLIN_RS22100 at 4439.467 kb on - strand, within ECOLIN_RS22100 at 4439.467 kb on - strand, within ECOLIN_RS22100 at 4439.587 kb on - strand, within ECOLIN_RS22100 at 4439.726 kb on + strand, within ECOLIN_RS22100 at 4439.802 kb on - strand, within ECOLIN_RS22100 at 4439.877 kb on + strand, within ECOLIN_RS22100 at 4439.881 kb on + strand, within ECOLIN_RS22100 at 4439.881 kb on + strand, within ECOLIN_RS22100 at 4439.881 kb on + strand, within ECOLIN_RS22100 at 4439.881 kb on + strand, within ECOLIN_RS22100 at 4439.881 kb on + strand, within ECOLIN_RS22100 at 4439.882 kb on - strand, within ECOLIN_RS22100 at 4439.882 kb on - strand, within ECOLIN_RS22100 at 4439.973 kb on + strand, within ECOLIN_RS22100 at 4440.122 kb on + strand at 4440.123 kb on - strand at 4440.237 kb on + strand at 4440.237 kb on + strand at 4440.238 kb on - strand at 4440.271 kb on + strand, within ECOLIN_RS22105 at 4440.271 kb on + strand, within ECOLIN_RS22105 at 4440.271 kb on + strand, within ECOLIN_RS22105 at 4440.271 kb on + strand, within ECOLIN_RS22105 at 4440.272 kb on - strand, within ECOLIN_RS22105 at 4440.272 kb on - strand, within ECOLIN_RS22105 at 4440.273 kb on + strand, within ECOLIN_RS22105 at 4440.273 kb on + strand, within ECOLIN_RS22105 at 4440.273 kb on + strand, within ECOLIN_RS22105 at 4440.273 kb on + strand, within ECOLIN_RS22105 at 4440.273 kb on + strand, within ECOLIN_RS22105 at 4440.273 kb on + strand, within ECOLIN_RS22105 at 4440.273 kb on + strand, within ECOLIN_RS22105 at 4440.274 kb on - strand, within ECOLIN_RS22105 at 4440.274 kb on - strand, within ECOLIN_RS22105 at 4440.274 kb on - strand, within ECOLIN_RS22105 at 4440.274 kb on - strand, within ECOLIN_RS22105 at 4440.274 kb on - strand, within ECOLIN_RS22105 at 4440.274 kb on - strand, within ECOLIN_RS22105 at 4440.274 kb on - strand, within ECOLIN_RS22105 at 4440.274 kb on - strand, within ECOLIN_RS22105 at 4440.274 kb on - strand, within ECOLIN_RS22105 at 4440.454 kb on + strand, within ECOLIN_RS22105 at 4440.588 kb on + strand, within ECOLIN_RS22105 at 4440.589 kb on - strand, within ECOLIN_RS22105 at 4440.766 kb on - strand, within ECOLIN_RS22105 at 4440.843 kb on - strand, within ECOLIN_RS22105 at 4440.843 kb on - strand, within ECOLIN_RS22105 at 4440.871 kb on + strand at 4440.871 kb on + strand at 4440.872 kb on - strand at 4440.890 kb on + strand at 4440.891 kb on - strand at 4440.893 kb on + strand at 4440.934 kb on + strand at 4440.971 kb on + strand at 4440.972 kb on - strand at 4440.972 kb on - strand at 4441.008 kb on - strand at 4441.114 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,438,142 - ECOLIN_RS22090 0.64 +0.5 4,438,157 - ECOLIN_RS22090 0.65 +0.0 4,438,157 - ECOLIN_RS22090 0.65 -0.4 4,438,279 + ECOLIN_RS22090 0.78 -0.3 4,438,279 + ECOLIN_RS22090 0.78 -0.3 4,438,304 + ECOLIN_RS22090 0.80 +0.6 4,438,304 + ECOLIN_RS22090 0.80 -0.5 4,438,379 + ECOLIN_RS22090 0.88 +0.3 4,438,416 - -0.4 4,438,452 - -0.2 4,438,480 + -0.0 4,438,480 + +0.2 4,438,480 + +0.3 4,438,605 - ECOLIN_RS22095 0.13 -0.4 4,438,742 - ECOLIN_RS22095 0.35 -0.2 4,438,774 + ECOLIN_RS22095 0.40 -0.2 4,438,833 + ECOLIN_RS22095 0.50 -0.6 4,438,833 + ECOLIN_RS22095 0.50 -0.1 4,438,834 - ECOLIN_RS22095 0.50 +0.0 4,438,837 + ECOLIN_RS22095 0.50 -0.2 4,438,892 - ECOLIN_RS22095 0.59 -0.3 4,438,990 + ECOLIN_RS22095 0.75 -0.2 4,438,990 + ECOLIN_RS22095 0.75 +0.2 4,438,990 + ECOLIN_RS22095 0.75 +0.0 4,438,997 - ECOLIN_RS22095 0.76 +0.1 4,438,997 - ECOLIN_RS22095 0.76 -0.3 4,439,023 + ECOLIN_RS22095 0.80 -0.2 4,439,137 + -0.4 4,439,138 - +0.2 4,439,138 - +0.3 4,439,141 - -0.1 4,439,153 + -0.6 4,439,154 - -0.3 4,439,154 - -0.0 4,439,154 - +0.2 4,439,205 + -0.0 4,439,239 - -0.4 4,439,239 - -0.1 4,439,239 - -0.3 4,439,364 + ECOLIN_RS22100 0.22 +0.2 4,439,364 + ECOLIN_RS22100 0.22 +0.1 4,439,364 + ECOLIN_RS22100 0.22 -0.2 4,439,365 - ECOLIN_RS22100 0.22 -0.1 4,439,365 - ECOLIN_RS22100 0.22 -0.1 4,439,395 + ECOLIN_RS22100 0.25 -0.2 4,439,417 + ECOLIN_RS22100 0.28 +0.3 4,439,467 - ECOLIN_RS22100 0.33 -0.4 4,439,467 - ECOLIN_RS22100 0.33 +0.2 4,439,587 - ECOLIN_RS22100 0.45 -1.3 4,439,726 + ECOLIN_RS22100 0.58 -0.1 4,439,802 - ECOLIN_RS22100 0.66 -0.2 4,439,877 + ECOLIN_RS22100 0.73 -0.1 4,439,881 + ECOLIN_RS22100 0.74 +0.1 4,439,881 + ECOLIN_RS22100 0.74 +0.2 4,439,881 + ECOLIN_RS22100 0.74 +0.3 4,439,881 + ECOLIN_RS22100 0.74 +0.1 4,439,881 + ECOLIN_RS22100 0.74 -0.0 4,439,882 - ECOLIN_RS22100 0.74 +0.6 4,439,882 - ECOLIN_RS22100 0.74 -0.0 4,439,973 + ECOLIN_RS22100 0.83 -0.1 4,440,122 + +0.2 4,440,123 - +0.1 4,440,237 + +0.1 4,440,237 + +0.0 4,440,238 - +0.1 4,440,271 + ECOLIN_RS22105 0.14 +0.1 4,440,271 + ECOLIN_RS22105 0.14 -0.5 4,440,271 + ECOLIN_RS22105 0.14 -0.1 4,440,271 + ECOLIN_RS22105 0.14 +1.2 4,440,272 - ECOLIN_RS22105 0.14 +0.2 4,440,272 - ECOLIN_RS22105 0.14 -0.4 4,440,273 + ECOLIN_RS22105 0.14 +0.4 4,440,273 + ECOLIN_RS22105 0.14 -0.1 4,440,273 + ECOLIN_RS22105 0.14 +0.2 4,440,273 + ECOLIN_RS22105 0.14 +0.0 4,440,273 + ECOLIN_RS22105 0.14 -0.0 4,440,273 + ECOLIN_RS22105 0.14 -0.3 4,440,273 + ECOLIN_RS22105 0.14 +0.6 4,440,274 - ECOLIN_RS22105 0.14 +0.2 4,440,274 - ECOLIN_RS22105 0.14 -0.0 4,440,274 - ECOLIN_RS22105 0.14 -0.2 4,440,274 - ECOLIN_RS22105 0.14 -0.2 4,440,274 - ECOLIN_RS22105 0.14 +0.1 4,440,274 - ECOLIN_RS22105 0.14 +0.1 4,440,274 - ECOLIN_RS22105 0.14 -0.4 4,440,274 - ECOLIN_RS22105 0.14 -0.2 4,440,274 - ECOLIN_RS22105 0.14 -0.2 4,440,454 + ECOLIN_RS22105 0.37 +0.6 4,440,588 + ECOLIN_RS22105 0.55 +0.1 4,440,589 - ECOLIN_RS22105 0.55 -0.5 4,440,766 - ECOLIN_RS22105 0.78 -0.4 4,440,843 - ECOLIN_RS22105 0.88 -0.1 4,440,843 - ECOLIN_RS22105 0.88 +0.1 4,440,871 + +0.2 4,440,871 + -0.1 4,440,872 - +0.7 4,440,890 + -0.1 4,440,891 - +0.1 4,440,893 + -0.3 4,440,934 + -0.1 4,440,971 + -0.3 4,440,972 - -0.2 4,440,972 - -0.5 4,441,008 - -0.3 4,441,114 + -0.0
Or see this region's nucleotide sequence